📦 libvcflib-tools

A

• abba-baba(1)✨

B

• bFst(1)✨

D

• dumpContigsFromHeader(1)✨

G

• genotypeSummary(1)✨

H

• hapLrt(1)✨

I

• iHS(1)✨

M

• meltEHH(1)✨

N

• normalize-iHS(1)✨

P

• permuteGPAT++(1)✨
• permuteSmooth(1)✨
• pFst(1)✨
• plotHaps(1)✨
• popStats(1)✨
• pVst(1)✨
• pyvcflib(1)✨

S

• segmentFst(1)✨
• segmentIhs(1)✨
• sequenceDiversity(1)✨
• smoother(1)✨

V

• vcf2dag(1)✨
• vcf2fasta(1)✨
• vcf2tsv(1)✨
• vcfaddinfo(1)✨
• vcfafpath(1)✨
• vcfallelicprimitives(1)Converts stdin or given VCF file and reduces al‐ leles.✨
• vcfaltcount(1)✨
• vcfannotate(1)✨
• vcfannotategenotypes(1)✨
• vcfbreakmulti(1)✨
• vcfcat(1)✨
• vcfcheck(1)✨
• vcfclassify(1)✨
• vcfcleancomplex(1)✨
• vcfcombine(1)✨
• vcfcommonsamples(1)✨
• vcfcountalleles(1)✨
• vcfcreatemulti(1)collates single ALT allele records into multi-allele records while tracking genotypes✨
• vcfdistance(1)✨
• vcfecho(1)✨
• vcfentropy(1)✨
• vcfevenregions(1)✨
• vcffilter(1)✨
• vcffixup(1)✨
• vcfflatten(1)✨
• vcfgeno2alleles(1)✨
• vcfgeno2haplo(1)✨
• vcfgenosamplenames(1)✨
• vcfgenosummarize(1)✨
• vcfgenotypecompare(1)✨
• vcfgenotypes(1)✨
• vcfglbound(1)✨
• vcfglxgt(1)✨
• vcfhetcount(1)✨
• vcfhethomratio(1)✨
• vcfindex(1)✨
• vcfinfo2qual(1)✨
• vcfinfosummarize(1)✨
• vcfintersect(1)✨
• vcfkeepgeno(1)✨
• vcfkeepinfo(1)✨
• vcfkeepsamples(1)✨
• vcfld(1)✨
• vcfleftalign(1)✨
• vcflength(1)✨
• vcflib(1)✨
• vcflib-api(1)✨
• vcfnulldotslashdot(1)✨
• vcfnullgenofields(1)✨
• vcfnumalt(1)✨
• vcfoverlay(1)✨
• vcfparsealts(1)✨
• vcfprimers(1)✨
• vcfqual2info(1)✨
• vcfrandom(1)✨
• vcfrandomsample(1)✨
• vcfremap(1)✨
• vcfremoveaberrantgenotypes(1)✨
• vcfremovesamples(1)✨
• vcfroc(1)✨
• vcfsample2info(1)✨
• vcfsamplediff(1)✨
• vcfsamplenames(1)✨
• vcfsitesummarize(1)✨
• vcfstats(1)✨
• vcfstreamsort(1)✨
• vcfuniq(1)✨
• vcfuniqalleles(1)✨
• vcfwave(1)reduces complex alleles by pairwise alignment with BiWFA✨

W

• wcFst(1)✨