VCFR...YPES(1)

💖 vcfremoveaberrantgenotypes 💖

okay bestie, so this one lives in the vcflib fam, and the section it belongs to is VCF transformation — that's literally what the top of the page says. no cap. ✨

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🌸 NAME 🌸

vcfremoveaberrantgenotypes — the little tool whose whole personality is cleaning up after messy genotype calls 🧹

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🎀 SYNOPSIS 🎀

vcfremoveaberrantgenotypes

yeah that's it. no flags, no args, no drama. she just is. main character energy fr fr 💅

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✨ DESCRIPTION ✨

so here's the tea 🫖: this thing strips samples which are homozygous but have observations implying heterozygosity.

in other words — it removes samples for which the reported genotype (GT) and the observation counts disagree (AO, RO). like, if the sample says "i'm homozygous bestie, i promise" but the actual observations are screaming heterozygosity, that sample is getting ✂️ removed. bye. 🦋

not me side-eyeing every sample whose GT doesn't match its AO/RO 🙈

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🔥 OPTIONS 🔥

she has exactly one thing to declare, and it's about her whole identity:

• Type: transformation 👑

that's it. that's the option list. iconic.

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💀 EXIT VALUES 💀

• 0 — Success ✨ you ate, bestie.
• not 0 — Failure 😭 something went sideways.

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🌈 SEE ALSO 🌈

• vcflib(1) — the whole squad 💜

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🍓 OTHER 🍓

LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins. 📜

AUTHORS

Erik Garrison and vcflib contributors. 👑

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aaaand that's the page!! 🎀 this whole vibe came to you straight from vcfremoveaberrantgenotypes (vcflib) — mwah, slay, go remove some aberrant genotypes 💖✨🦋