VCFGENOSUMMARIZE(1)

✨ VCFGENOSUMMARIZE(1) ✨

okay bestie, so this is vcfgenosummarize, and it lives in the vcfgenosummarize (VCF statistics) section of the manual — it's a vcflib girlie through and through 💅

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🌸 NAME 🌸

vcfgenosummarize — that's her, that's the name, no notes 💖

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🎀 SYNOPSIS 🎀

vcfgenosummarize <[input file] >[output vcf]

like... yes, she reads from stdin and writes to stdout, that's just the vibe 🦋

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💜 DESCRIPTION 💜

okay so here's the tea 🍓: this tool adds summary statistics to each record, and those stats summarize the qualities that got reported in the called genotypes. main character behavior honestly 👑

and the qualities it pulls from are, in order:

• RO — reference observation count
• QR — quality sum reference observations
• AO — alternate observation count
• QA — quality sum alternate observations

periodt. that's the whole job and she does it flawlessly 💅✨

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🌈 OPTIONS 🌈

• Type: statistics — yeah that's the type, that's what we're working with 💀

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👑 EXIT VALUES 👑

• 0 — Success! ate and left no crumbs 🎉
• not 0 — Failure 😭 something went wrong bestie, vibe check failed

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🧚 SEE ALSO 🧚

• vcflib(1) — go say hi to the whole family 🫶

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💖 OTHER 💖

⭐ LICENSE ⭐

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

(open source royalty, we love to see it 👑)

🌸 AUTHORS 🌸

Erik Garrison and vcflib contributors. icons only, no cap 💜

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lowkey this whole page is short and sweet, which is exactly the energy we're going for. fr fr.

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signing off from the vcflib corner of the manual, where this page belongs to vcfgenosummarize (vcflib) — that's the source, that's the version, and that's the whole entire lore 💅✨🦋🌸💖