VCFANN...OTYPES(1)

💖 vcfannotategenotypes 💖

okay bestie, so this one is a lil page from the vcflib crew, and the manual name is literally vcfannotategenotypes — the whole thing is filed under VCF transformation energy. it's short, it's sweet, and it's about to make your genotype flags iconic. let's go 🦋

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✨ NAME ✨

vcfannotategenotypes — that's the whole name, that's the girl, periodt 💅

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🌸 SYNOPSIS 🌸

vcfannotategenotypes

yeah she takes no arguments up here, the real sauce lives in the description. keep reading bestie 🙈

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🎀 DESCRIPTION 🎀

okay so the whole vibe here is examining genotype correspondence. we're comparing, we're matching, we're doing the most. 💖

here's the tea: it annotates genotypes in the first file with genotypes in the second, and it does that by adding the genotype as another flag to each sample filed in the first file. yes, every sample, no skipping, no shortcuts. 🫶

annotation-tag is the name of the sample flag that gets added to store the annotation — that's your label, your little name tag, your whole identity for the new flag. 🏷️✨

and wait, there's more: it also adds a has_variant flag for sites where the second file has a variant. so if file two is serving variant realness, file one gets to know about it. main character energy fr fr 👑

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💅 OPTIONS 💅

• Type: transformation

that's it. that's the option list. one (1) whole vibe check and she passed 🌈

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🍓 EXIT VALUES 🍓

• 0 — Success. she ate. no crumbs. ✨
• not 0 — Failure. 😭 it's giving "we don't talk about it"

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🧚 SEE ALSO 🧚

• vcflib(1) — the family, the squad, the whole ecosystem 💜

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⭐ OTHER ⭐

💜 LICENSE 💜

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

👑 AUTHORS 👑

Erik Garrison and vcflib contributors.

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ngl bestie, this is a short one but the flag-adding is highkey useful, iykyk. 🎀

okay that's the page!! big love to vcflib and to VCF transformation — the source, the version, and the date on this one are vcflib-flavored, and she's been sitting pretty since forever. bye babes, go annotate something 💖🦋🌸