VCFINFOSUMMARIZE(1)

📦
version 1.0.12 · 3 versions
, in debian trixie, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 vcfinfosummarize 💖

okay bestie, welcome to the manual page for vcfinfosummarize, part of the vcflib family of VCF transformation tools 💅 she's a command-line girly, she takes options, and she is so good at what she does.

✨ NAME ✨

vcfinfosummarize — like, that's her name, that's her whole brand 🎀

🌸 SYNOPSIS 🌸

vcfinfosummarize options

🦋 DESCRIPTION 🦋

okay so here's the tea ☕ — you've got annotations sitting in your per-sample fields, and they're just... vibing there, being all per-sample about it. rude, honestly.

so vcfinfosummarize steps in, takes those annotations, and computes the mean, the median, the min, or the max — and then adds that summary stat to the site-level INFO. one number per site, iconic behavior, no notes. ✨

👑 OPTIONS 👑

  • -f, --field — summarize this field, the one in the INFO column. tell her which one, bestie.
  • -i, --info — store the computed statistic in this info field. you pick the destination, she handles the journey 🫶
  • -a, --average — take the mean for the field. this is the default, so if you say nothing she'll just do this 💅
  • -m, --median — use the median. middle-child energy, respectfully.
  • -n, --min — use the min. the smallest, the humblest, the underdog 🥺
  • -x, --max — use the max. main character energy fr fr 🔥
  • -h, --help — print this message. she'll tell you everything 🎀
  • -v, --version — print version. know who you're dealing with ⭐

💀 EXIT VALUES 💀

  • 0 — Success 🎉 she ate, she left no crumbs
  • not 0 — Failure 😭 something went sideways, go check your args bestie

🌈 SEE ALSO 🌈

  • vcflib(1) — the whole squad, the mothership, the family tree 🌳

🍓 OTHER 🍓

📜 LICENSE 📜

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

🧚 AUTHORS 🧚

Erik Garrison and vcflib contributors.

and that's the whole page, bestie — vcfinfosummarize, living her life under the vcflib umbrella (that's the source, that's the version tag, iykyk), and it was an honor and a privilege to summarize this summary tool 💜✌️

📦 where this page comes from