VCFSITESUMMARIZE(1)

💖 VCFSITESUMMARIZE 💖

okay bestie, welcome to vcfsitesummarize from the vcflib family (that's the VCF statistics corner of the manual, iykyk) 🧚✨

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✨ NAME ✨

vcfsitesummarize — literally the tool, that's the name, we love a no-notes intro 💅

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🌸 SYNOPSIS 🌸

vcfsitesummarize

that's it. that's the whole synopsis. no flags, no drama, just vibes 🎀

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🦋 DESCRIPTION 🦋

Summarize by site 🫶

like… it looks at your VCF and gives you the tea, site by site. no cap.

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🌈 EXAMPLES 🌈

okay so here's the example, and honestly? it ate:

Example:

vcfsitesummarize samples/sample.vcf

CHROM   POS     ID      REF     QUAL    FILTER  AA      AC      AF      AN      DP      NS      DB      H2
19      111     .       A       9.6     .                                                       0       0
19      112     .       A       10      .                                                       0       0
20      14370   rs6054257       G       29      PASS                    0.5             14      3       1 1
20      17330   .       T       3       q10                     0.017           11      3       0       0
20      1110696 rs6040355       A       67      PASS    T                               10      2       1 0
20      1230237 .       T       47      PASS    T                               13      3       0       0
20      1234567 microsat1       G       50      PASS    G                       6       9       3       0 0
20      1235237 .       T       0       .                                                       0       0
X       10      rsTest  AC      10      PASS

Type: statistics 📊

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💀 EXIT VALUES 💀

• 0 — Success 🎉 everything slayed, no notes
• not 0 — Failure 😭 it's giving error, it's giving not today

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👑 SEE ALSO 👑

• vcflib(1) — go say hi to the whole fam 💜

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🎀 OTHER 🎀

📜 LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

🫶 AUTHORS

Erik Garrison and vcflib contributors.

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and that's the whole page, bestie — written by the vcflib girlies, vcfsitesummarize (vcflib), mwah 💋✨