VCFGENO2HAPLO(1)

💖 VCFGENO2HAPLO(1) 💖

okay bestie, welcome to vcfgeno2haplo — she's a little transformation tool from the vcflib crew (manual section 1, if u were wondering) and she is literally so good at what she does 🧬✨

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🌸 NAME 🌸

vcfgeno2haplo — yes that's her, that's the name, no notes 💅

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🎀 SYNOPSIS 🎀

vcfgeno2haplo options []

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🦋 DESCRIPTION 🦋

okay so here's the vibe: this girl takes genotype-based phased alleles that live inside the –window-size and turns them into haplotype alleles. slay.

but bestie… ⚠️ if she runs into non-phased genotypes on the input, she will straight up break haplotype construction. like, construction over. done. no cap.

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✨ OPTIONS ✨

her options, bestie, all of them, in order:

• -h, --help — prints this message, ur lil help text 🫶
• -v, --version — prints the version, so u know which era of her ur dealing with
• -r, --reference FILE — the FASTA reference file, she needs it, it's giving essential
• -w, --window-size N — merges variants that are at most this many bp apart (default is 30) 📏
• -o, --only-variants — don't output the whole entire haplotype, just concatenate the REF/ALT strings (and yes, they're delimited by ":") 🍓

and then, the type tag:

• Type: transformation 💫

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👑 EXIT VALUES 👑

• 0 — Success 🎉 she ate, no crumbs
• not 0 — Failure 💀 something went wrong bestie, it happens

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💜 SEE ALSO 💜

• vcflib(1) — go say hi to the family, they're iconic too 🌈

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⭐ OTHER ⭐

🌟 LICENSE 🌟

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

🌸 AUTHORS 🌸

Erik Garrison and vcflib contributors.

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ok so like, respect the license bestie, MIT is generous, cite the girlies 💖

and that's the whole page!! mwah 💋 this one lives in vcfgeno2haplo over at vcflib, section 1 of the manual — thanks for reading, ur a main character fr fr ✨🎀🦋