SEGMENTIHS(1)

💖 segmentIhs — the manual, but make it make sense 💖

okay so bestie, welcome to SEGMENTIHS(1) — that's segmentIhs, section 1 of the manual, and it lives in the VCF statistics corner of the universe 🧬✨. It's a little script with big main character energy and honestly? She ate.

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✨ NAME ✨

segmentIhs — that's her name, that's her whole brand 💅

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🦋 SYNOPSIS 🦋

segmentFst -s 2 -f iHS.normalized.output.txt

not me copy-pasting that literally character for character, yes segmentFst is what it says, no I will not be "fixing" it for you 🙈

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🌸 DESCRIPTION 🌸

She makes genomic segments — like, as a bed file — for the regions that have high wcFst. That's the whole vibe. Segments in, bed file out, periodt. 🎀

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👑 OPTIONS 👑

💜 Output : 8 columns :

1. Seqid
2. Start (zero based)
3. End (zero based)
4. Average iHS
5. Average high Fst (iHS > -s)
6. N iHS values in segment
7. N high iHS values in segment
8. Segment length

eight columns bestie, count them, we don't skip any 💖

• -f — required, no skipping this one 🫶 — this is the output from normalizeIHS.
• -s — optional, lowkey iconic — the high absolute iHS cutoff, and the default is [2].

Type: statistics ✨

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⭐ EXIT VALUES ⭐

• 0 — Success 🎉 slay, it worked
• not 0 — Failure 💀 something went sideways

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🧚 SEE ALSO 🧚

• vcflib(1) — go read the family, they're all connected iykyk

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🌈 OTHER 🌈

📜 LICENSE 📜

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

🍓 AUTHORS 🍓

Erik Garrison and vcflib contributors.

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and that's the whole page, bestie!! no cap, every flag, every column, every copyright line accounted for 💖 this was segmentIhs (vcflib), filed under SEGMENTIHS(1) — go make some segments, you've got this 🦋✨👑