VCF2DAG(1)

✨ NAME ✨

okay bestie, meet vcf2dag — the little vcflib glow-up that takes your VCF and makes it DAG-ready, from the vcf2dag (VCF transformation) corner of the manual-verse. it's giving transformation-core and honestly? obsessed. 💅

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🌸 SYNOPSIS 🌸

vcf2dag options []

yeah that's the whole vibe. you hand it options and (per the synopsis) an empty argument slot, and it does the thing. 🎀

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🦋 DESCRIPTION 🦋

Modify VCF to be able to build a directed acyclic graph (DAG). no cap, that's the mission. 🌈

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👑 OPTIONS 👑

the options block, as promised, contains options:

• -r, --reference FILE — the FASTA reference file. that's it, that's the flag. 🍓

so what's actually happening under the hood? two things, and they're iconic:

• Modify the VCF file so that homozygous regions are included as REF/. calls. yes, fr fr, that's the actual call form.
• For each ref and alt allele, assign an index. ✨

These steps are sufficient to enable use of the VCF as a DAG (specifically a partially-ordered graph). main character graph energy, honestly. 💖

Type: transformation

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💀 EXIT VALUES 💀

• 0 — Success. slay. 🫶
• not 0 — Failure. it's giving tragedy, not a good look. 😭

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🔥 SEE ALSO 🔥

• vcflib(1) — the family. go say hi. 💜

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🌟 OTHER 🌟

📜 LICENSE 📜

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

🧚 AUTHORS 🧚

Erik Garrison and vcflib contributors.

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and that's the whole page, bestie — brought to you by vcf2dag (vcflib), the source/version stamped on this lil manual. no date on the footer in the original, so we're not making one up — iykyk. periodt. 💖✨🎀🦋🌸💅🫶👑🌈⭐💀🙈🍓🧚💜