NORMALIZE-IHS(1)

✨ NAME ✨

normalize-iHS — the little glow-up your selection scores have been begging for 💅

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🌸 SYNOPSIS 🌸

normalizeHS -s 0.01 -f input.txt

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🦋 DESCRIPTION 🦋

Okay bestie, listen. normalize-iHS normalizes your iHS or XP-EHH scores. That's the whole vibe. It takes those raw scores and makes them comparable, like matching outfits before a group photo 📸✨

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🎀 OPTIONS 🎀

• XP-EHH is directional, no cap. A cross-population extended haplotype homozygosity (XP-EHH) score points a direction: a positive score suggests selection likely happened in population A, while a negative score suggests the same thing about population B. For the receipts, see: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721/ 📚
• Output: normalize-iHS adds one additional column to the input — that's the normalized score, bestie. One column. Iconic behaviour honestly 👑
• required: -f — the output from iHS or XPEHH. Like, you literally cannot skip this one, it's the main character 🫶
• optional: -s — max AF diff for the window, defaults to [0.01]. Tweak it if you're feeling spicy 🌶️
• Type: genotype 🧬

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💀 EXIT VALUES 💀

• 0 — Success! You ate. ✨
• not 0 — Failure. It's giving… not it. 😭

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🌈 SEE ALSO 🌈

• vcflib(1) — the whole fam, go say hi 🫶

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🍓 OTHER 🍓

💜 LICENSE 💜

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

👑 AUTHORS 👑

Erik Garrison and vcflib contributors. Legends, fr fr 💖

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And that's the tea! This page is from normalize-iHS (vcflib) — the normalize-iHS (VCF genotype) manual, NORMALIZE-IHS(1). Copyright years on the tin: 2011-2024 and 2020-2024. Stay normalized, bestie 🧚💖