section 1 · User commands 💻

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G (continued)

gsc-script(1)Gambit Scheme Interpreter and Compiler✨
gscan2pdf(1p)A GUI to produce PDFs or DjVus from scanned documents✨
gscat(1)utility command for SCOTCH✨
gscat-int32(1)utility command for SCOTCH✨
gscat-int64(1)utility command for SCOTCH✨
gscat-long(1)utility command for SCOTCH✨
gsch2pcb(1)Update PCB layouts from gEDA/gaf schematics✨
gsch2pcb-rnd(1)dummy transitional utility✨
gschem(1)gEDA/gaf Schematic Capture✨
gschema_xml2yaml(1)convert gschema.xml files to YAML format✨
gschlas(1)gEDA schematic load and save✨
gsciteco(1)Scintilla-based Text Editor and COrrector✨
gscreen(1)TOUCHY LinuxCNC Graphical User Interface✨
gscriptor(1)Perl script to send commands to a smart card using a Gtk GUI✨
gscriptor(1p)Perl script to send commands to a smart card using a Gtk GUI✨
gsd(1)access native GSD file format for HOOMD-blue✨
gsdh_gnustep(1)perform various actions for GNUstep packages✨
gsdj(1)Format and print text using ghostscript gsbj - Format and print text for BubbleJet printer using ghostscript gsdj - Format and print text for DeskJet printer using ghostscript gsdj500 - Format and…✨
gsdj500(1)Format and print text using ghostscript gsbj - Format and print text for BubbleJet printer using ghostscript gsdj - Format and print text for DeskJet printer using ghostscript gsdj500 - Format and…✨
gsec(1)deprecated Firebird user management utility✨
gsequencer(1)Advanced Gtk+ Sequencer is an audio sequencer and composition editor✨
gsetroot(1)✨
gsettings(1)GSettings configuration tool✨
gsettings-data-convert(1)GConf to GSettings data migration✨
gsettings-schema-convert(1)GConf to GSettings schema conversion✨
gsf(1)archiving utility using the G Structured File library✨
gsf-office-thumbnailer(1)office files thumbnailer for the GNOME desktop✨
gsf-vba-dump(1)extract Visual Basic for Applications macros✨
gsftopk(1)render a ghostscript font in TeX pk form✨
gsftopk(1texmf-dist)render a ghostscript font in TeX pk form✨
gsh(1)Shell connection over TLS✨
gshutdown(1)An avanced shutdown utility✨
gsi(1)Gambit Scheme Interpreter and Compiler✨
gsi-script(1)Gambit Scheme Interpreter and Compiler✨
gsimplecal(1)lightweight calendar applet✨
gsiscp(1)OpenSSH secure file copy✨
gsisftp(1)OpenSSH secure file transfer✨
gsissh(1)OpenSSH remote login client✨
gsissh-keygen(1)OpenSSH authentication key utility✨
gsl(1)a code construction and generation tool✨
gsl-config(1)script to get version number and compiler flags of the installed GSL library✨
gsl-histogram(1)compute histogram of data on stdin✨
gsl-randist(1)generate random samples from various distributions✨
gslj(1)Format and print text using ghostscript gsbj - Format and print text for BubbleJet printer using ghostscript gsdj - Format and print text for DeskJet printer using ghostscript gsdj500 - Format and…✨
gslp(1)Format and print text using ghostscript gsbj - Format and print text for BubbleJet printer using ghostscript gsdj - Format and print text for DeskJet printer using ghostscript gsdj500 - Format and…✨
GSMarkupBrowser(1)GNUstep Development Framework✨
GSMarkupLocalizableStrings(1)GNUstep Development Framework✨
gsmartcontrol(1)Hard disk drive and SSD health inspection tool✨
gsmartcontrol-root(1)Hard disk drive and SSD health inspection tool✨
gsmctl(1)GSM mobile phone control program✨
gsmpb(1)GSM mobile phone phonebook manipulation program✨
gsmsendsms(1)SMS message sender utility✨
gsmsiexfer(1)Siemens ME file transfer program for Siemens phones S25, S35, S45, ME45, SL45✨
gsmsmsstore(1)SMS store manipulation program✨
gsnap(1)Genomic Short-read Nucleotide Alignment Program✨
gsnapl(1)Large Genome Short-read Nucleotide Alignment Program✨
gsnd(1)Run ghostscript (PostScript and PDF engine) without display✨
gsocket(1)connect like there is no firewall. Securely.✨
gsort(1)sort genomic data✨
gsound(1)Tool for doing sound I/O using the sound gensio✨
gsound-play(1)a small library for playing system sounds✨
gspath(1)Utility to display standard directory/path information✨
gspectrum(1)a small spectrum viewer application✨
gspectrum-0.14(1)a small spectrum viewer application✨
gsr-cli(1)Control a running GPU Screen Recorder instance✨
gsr-kms-server(1)KMS (Kernel Mode Setting) server for GPU Screen Recorder✨
gsr-ui(1)A fullscreen overlay UI for GPU Screen Recorder in the style of ShadowPlay✨
gsr-ui-cli(1)command-line interface for gsr-ui✨
gss(1)Generic Security Service command line interface✨
gss-token(1)generate and consume base64 GSS tokens✨
gssdp-device-sniffer(1)display SSDP packets on your network✨
GSSpeechRecognitionServer(1)GNUstep Speech Recognition Server✨
GSSpeechServer(1)GNUstep Speech Server✨
gst(1)the GNU Smalltalk virtual machine✨
gst-config(1)configuration for libgst✨
gst-convert(1)Smalltalk syntax converter and beautifier✨
gst-device-monitor-1.0(1)Simple command line testing tool for GStreamer device monitors✨
gst-discoverer-1.0(1)Display file metadata and stream information✨
gst-doc(1)GNU Smalltalk documentation generator✨
gst-inspect-1.0(1)print info about a GStreamer plugin or element✨
gst-launch-1.0(1)build and run a GStreamer pipeline✨
gst-load(1)test and load packages into a GNU Smalltalk image✨
gst-omx-listcomponents(1)program to list the name of components in openmax IL✨
gst-package(1)create and install GNU Smalltalk .star package files✨
gst-play-1.0(1)Simple command line playback testing tool✨
gst-profile(1)GNU Smalltalk profiler✨
gst-reload(1)test and load packages into a GNU Smalltalk image✨
gst-stats-1.0(1)print info gathered from a GStreamer log file✨
gst-sunit(1)unit testing tool for GNU Smalltalk✨
gst-typefind-1.0(1)print Media type of file✨
gst123(1)A GStreamer based command line media player✨
gst2ascii(1)Filter and output Atari program symbol table as ASCII✨
gstack(1)Print a stack trace of a running program✨
gstack-oneapi(1)Print a stack trace of a running program✨
gstat(1)manual page for Ganglia Status Tool✨
GSTest(1)various example GNUstep tools/applications✨
gsymcheck(1)gEDA/gaf Symbol Checker✨
gsymfix(1)automatically fix common issues with gEDA symbols✨
gt(1)The GenomeTools genome analysis system.✨
gt-bed_to_gff3(1)Parse BED file and convert it to GFF3.✨
gt-cds(1)Add CDS (coding sequence) features to exon features given in GFF3 file.✨
gt-chain2dim(1)Chain pairwise matches.✨
gt-chseqids(1)Change sequence ids by the mapping given in a mapping file.✨
gt-clean(1)Remove all files in the current directory which are automatically created by gt.✨
gt-compreads(1)Call a fastq file compression tool.✨
gt-compreads-compress(1)Generates compact encoding for fastq data.✨
gt-compreads-decompress(1)Decodes a file of compressed reads.✨
gt-compreads-refcompress(1)Generates compact encoding for fastq data using Reference Compressed Reads (RCR).✨
gt-compreads-refdecompress(1)Decodes a given RCR (Reference Compressed Reads).✨
gt-condenseq(1)Call one of the CONDENSER tools to prepare or manipulate redundancy compressed genomic data.✨
gt-congruence(1)Call a congruence subtool and pass argument(s) to it.✨
gt-congruence-spacedseed(1)Match spaced seeds.✨
gt-convertseq(1)Parse and convert sequence file formats (FASTA/FASTQ, GenBank, EMBL).✨
gt-csa(1)Transform spliced alignments from GFF3 file into consensus spliced alignments.✨
gt-dot(1)Prints feature graphs in dotfile format.✨
gt-dupfeat(1)Duplicate internal feature nodes in given GFF3 files.✨
gt-encseq(1)Call an encoded sequence manipulation tool and pass argument(s) to it.✨
gt-encseq-bench(1)Perform benchmark on extractions from encseq.✨
gt-encseq-bitextract(1)Extracts internal data from encoded sequences.✨
gt-encseq-check(1)Check the consistency of an encoded sequence file.✨
gt-encseq-decode(1)Decode/extract encoded sequences.✨
gt-encseq-encode(1)Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently.✨
gt-encseq-info(1)Display meta-information about an encoded sequence.✨
gt-encseq-md5(1)Display MD5 sums for an encoded sequence.✨
gt-encseq-sample(1)Decode/extract encoded sequences by random choice.✨
gt-encseq2spm(1)Compute suffix prefix matches from encoded sequence.✨
gt-eval(1)Compare annotation files and show accuracy measures (prediction vs. reference).✨
gt-extractfeat(1)Extract features given in GFF3 file from sequence file.✨
gt-extractseq(1)Extract sequences from given sequence file(s) or fastaindex.✨
gt-fastq_sample(1)Print samples by random choice from given FASTQ files using at least n sequence-chars. Output is fastq/fasta format depending on whether qualities are available.✨
gt-featureindex(1)Retrieve annotations from a persistent feature index as GFF3 output.✨
gt-fingerprint(1)Compute MD5 fingerprints for each sequence given in a set of sequence files.✨
gt-genomediff(1)Calculates Kr: pairwise distances between genomes.✨
gt-gff3(1)Parse, possibly transform, and output GFF3 files.✨
gt-gff3_to_gtf(1)Parse GFF3 file(s) and show them as GTF2.2.✨
gt-gff3validator(1)Strictly validate given GFF3 files.✨
gt-gtf_to_gff3(1)Parse GTF2.2 file and convert it to GFF3.✨
gt-hop(1)Cognate sequence-based homopolymer error correction.✨
gt-id_to_md5(1)Change sequence IDs in given GFF3 files to MD5 fingerprints of the corresponding sequences.✨
gt-inlineseq_add(1)Adds inline sequences from external source to GFF3 input.✨
gt-inlineseq_split(1)Split GFF3 annotations with inline sequences into separate files.✨
gt-interfeat(1)Add intermediary features between outside features in given GFF3 file(s).✨
gt-loccheck(1)Checks parent-child containment in GFF3 input.✨
gt-ltrclustering(1)Cluster features of LTRs.✨
gt-ltrdigest(1)Identifies and annotates sequence features in LTR retrotransposon candidates.✨
gt-ltrharvest(1)Predict LTR retrotransposons.✨
gt-matchtool(1)Parse match formats and/or invoke matching tools.✨
gt-matstat(1)Compute matching statistics.✨
gt-md5_to_id(1)Change MD5 fingerprints used as sequence IDs in given GFF3 files to ``regular'' ones.✨
gt-merge(1)Merge sorted GFF3 files in sorted fashion.✨
gt-mergefeat(1)Merge adjacent features without children of the same type in given GFF3 file(s).✨
gt-mkfeatureindex(1)Creates a new FeatureIndex from annotation data.✨
gt-mmapandread(1)Map the supplied files into memory and read them once.✨
gt-orffinder(1)Identifies ORFs (open reading frames) in sequences.✨
gt-packedindex(1)Call apacked index subtool and pass argument(s) to it.✨
gt-prebwt(1)Precompute bwt-bounds for some prefix length.✨
gt-readjoiner(1)Readjoiner: a string graph-based sequence assembler.✨
gt-readjoiner-assembly(1)Construct string graph and output contigs.✨
gt-readjoiner-overlap(1)Compute suffix prefix matches from encoded sequence.✨
gt-readjoiner-prefilter(1)Remove contained and low-quality reads and encode read set in GtEncseq format.✨
gt-repfind(1)Compute maximal exact matches (and more).✨
gt-scriptfilter(1)Get info about and validate Lua script filters.✨
gt-seed_extend(1)Calculate local alignments using the seed and extend algorithm.✨
gt-select(1)Select certain features (specified by the used options) from given GFF3 file(s).✨
gt-seq(1)Parse the given sequence file(s) and construct the corresponding index files.✨
gt-seqfilter(1)Filter the given sequence file(s) and show the results on stdout.✨
gt-seqids(1)Show sequence IDs from annotation file.✨
gt-seqmutate(1)Mutate the sequences of the given sequence file(s).✨
gt-seqorder(1)Output sequences as MultiFasta in specified order.✨
gt-seqstat(1)Calculate statistics for fasta file(s).✨
gt-seqtransform(1)Perform simple transformations on the given sequence file(s).✨
gt-seqtranslate(1)Translates a nucleotide sequence into a protein sequence.✨
gt-sequniq(1)Filter out repeated sequences in given sequence files.✨
gt-shredder(1)Shredder sequence file(s) into consecutive pieces of random length.✨
gt-shulengthdist(1)Compute distribution of pairwise shustring lengths.✨
gt-simreads(1)Simulate sequencing reads from random positions in the input sequence(s).✨
gt-sketch(1)Create graphical representation of GFF3 annotation files.✨
gt-sketch_page(1)Draw a multi-page PDF/PS representation of an annotation file.✨
gt-snpper(1)Annotates SNPs according to their effect on the genome as given by a genomic annotation.✨
gt-speck(1)Checks spec definition compliance in GFF3 input.✨
gt-splicesiteinfo(1)Show information about splice sites given in GFF3 files.✨
gt-splitfasta(1)Split the supplied fasta file.✨
gt-stat(1)Show statistics about features contained in GFF3 files.✨
gt-tagerator(1)Map short sequence tags in given index.✨
gt-tallymer(1)Call a tallymer subtool and pass argument(s) to it.✨
gt-tallymer-mkindex(1)Count and index k-mers in the given enhanced suffix array for a fixed value of k.✨
gt-tallymer-occratio(1)Compute occurrence ratio for a set of sequences represented by an enhanced suffix array.✨
gt-tallymer-search(1)Search a set of k-mers in an index constructed by ``gt tallymer mkindex''.✨
gt-tirvish(1)Identify Terminal Inverted Repeat (TIR) elements,such as DNA transposons.✨
gt-uniq(1)Filter out repeated feature node graphs in a sorted GFF3 file.✨
gt-uniquesub(1)Compute length of minimum unique prefixes.✨
gt-wtree(1)Call an wtree manipulation tool and pass argument(s) to it.✨
gt5(1)a diff-capable 'du-browser'✨
gt7cvt(1)tape conversion utility✨
gt_mpi_gather(1)MPI gatherer for GenomicsDB✨
gtab-merge(1)gcin's .gtab data merging tool✨
gtags(1)create tag files for global✨
gtags-cscope(1)interactively examine a C program✨
GTAMSAnalyzer(1)Qualitative Research Software✨
gtar(1)an archiving utility✨