GT-ENCSEQ2SPM(1)

📦
version 1.6.6 · 5 versions
, in ubuntu resolute, ubuntu stonking

✨ NAME ✨

gt-encseq2spm — bestie, this one computes suffix prefix matches from an encoded sequence 💅 (it lives in the GenomeTools manual, section 1, iykyk)

🦋 SYNOPSIS 🦋

gt encseq2spm [option ...] [file]

🎀 DESCRIPTION 🎀

okay so here's the whole vibe — every flag, no skips, no cap 👑

  • -l [value] — specify the minimum length (default: 0) 📏
  • -parts [value] — specify the number of parts (default: 0) 🧩
  • -memlimit [string] — specify maximal amount of memory to be used during index construction (in bytes, the keywords MB and GB are allowed) (default: undefined) 🧠
  • -singlestrand [yes|no] — use only the forward strand of the sequence (default: no) 🌈
  • -spm [string] — specify output for spms (default: undefined) 📤
  • -ii [string] — specify the input sequence (default: undefined) 📥
  • -v [yes|no] — be verbose (default: no) 🗣️
  • -help — display help and exit 🙋‍♀️
  • -version — display version information and exit 🏷️
not me listing every single one of these because they ALL matter, periodt 💖

🐛 REPORTING BUGS 🐛

found a bug? don't suffer in silence bestie 😭 report it to https://github.com/genometools/genometools/issues and let the maintainers handle it 🫶

that's the whole page, babe ✨ this was GenomeTools 1.6.6, dated 11/09/2025, and the manual page itself is GT-ENCSEQ2SPM(1) — slay, go compute those spms 💅🌸

📦 where this page comes from