GSORT(1)

💖 GSORT(1) 💖

okay bestie, welcome to the gsort page — that's the manual for gsort, living under User Commands. she sorts genomic data. that's it, that's the whole vibe. let's get into it ✨

🌸 NAME 🌸

gsort — sort genomic data 🧬

✨ SYNOPSIS ✨

gsort [--chromosomemappings CHROMOSOMEMAPPINGS] [--memory MEMORY]
[--parent] PATH GENOME

🦋 DESCRIPTION 🦋

🎀 Positional arguments:

• PATH — a tab-delimited file to sort. yes, tabs. she's picky like that 💅
• GENOME — a genome file of chromosome sizes and order. this is the blueprint, the map, the who's-who of your chromosomes.

💅 OPTIONS 💅

• --chromosomemappings CHROMOSOMEMAPPINGS, -c CHROMOSOMEMAPPINGS — a file used to re-map chromosome names, for example from hg19 to GRCh37. it's giving glow-up, but for chromosome names 🦋
• --memory MEMORY, -m MEMORY — megabytes of memory to use before writing to temp files. [default: 2800] no cap, 2800 is the default 🫶
• --parent, -p — for gff only. given rows with same chrom and start, put those with a 'Parent' attribute first. parent gets priority, main character energy fr fr 👑
• --help, -h — display this help and exit. iconic behaviour honestly 😌

👑 AUTHOR 👑

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.

lowkey a whole legend for writing this one 💜

and that's the whole page bestie, you ate it 💖 this was gsort version 0.1.4, dated November 2020 — mwah, periodt 🎀✨🌈