GT-READJOINER-OVER(1)

📦
version 1.6.6 · 5 versions
, in ubuntu resolute, ubuntu stonking

✨ GT-READJOINER-OVERLAP — bestie, it's giving overlap ✨

okay so this is the GenomeTools Manual page for gt-readjoiner-overlap, aka the compute suffix prefix matches from encoded sequence girlie 💅 she lives in the gt readjoiner overlap command and she is SO ready to find your matches.

🦋 NAME 🦋

gt-readjoiner-overlap — compute suffix prefix matches from encoded sequence. no cap, that's literally what she does 💖

🌸 SYNOPSIS 🌸

gt readjoiner overlap [option ...] [file]

👑 DESCRIPTION 👑

okay bestie, here's the whole menu of options. every single one, we're not skipping anything, periodt ✨

  • -readset [string] — specify the readset name (default: undefined)
  • -l [value] — specify the minimum SPM length (default: 0)
  • -parts [value] — specify the number of parts (default: 0)
  • -memlimit [string] — specify maximal amount of memory to be used during index construction (in bytes, the keywords MB and GB are allowed) (default: undefined)
  • -v [yes|no] — be verbose (default: no)
  • -q [yes|no] — suppress standard output messages (default: no)
  • -help — display help and exit
  • -version — display version information and exit
💀 lowkey important: -readset and -memlimit default to undefined, not to some sneaky hidden value. so if you don't pass them, they're just… not there. 🫶

🎀 REPORTING BUGS 🎀

found a bug? not the vibe 😭 report it to https://github.com/genometools/genometools/issues and the devs will handle it, we love that for us 💜

and that's the whole page, bestie!! this was GenomeTools 1.6.6, dated 11/09/2025, from the GenomeTools Manual 🧚 slay, go compute those suffix prefix matches, mwah 💅✨🍓

📦 where this page comes from