GT-SHULENGTHDIST(1)

📦
version 1.6.6 · 5 versions
, in ubuntu resolute, ubuntu stonking

💖 GT-SHULENGTHDIST(1) 💖

okay so bestie, welcome to the GenomeTools manual, and today's main character is gt-shulengthdist — a whole entire tool for computing the distribution of pairwise shustring lengths. yes, shustring. no, i'm not making that word up. it's giving bioinformatics royalty fr fr 🧬👑

✨ NAME ✨

gt-shulengthdist — compute distribution of pairwise shustring lengths 💅

🌸 SYNOPSIS 🌸

gt shulengthdist [options] -ii indexname

look at her. short, sweet, slays. the -ii is not optional, so don't come to the function without it 🫶

🦋 DESCRIPTION 🦋

so here's the tea, and by tea i mean every single flag this icon accepts, no skips, no cuts, full deluxe edition:

  • -ii [string] — specify the input index. default is undefined, which is honestly such a mood, but like… you should probably define it. this is your indexname, bestie, the one from the synopsis. don't leave her hanging 💀
  • -scan [yes|no] — scan the index rather than mapping it to main memory. default: no. so by default she maps it, and if you say yes she scans instead. lowkey a whole different vibe for your RAM.
  • -v [yes|no] — be verbose. default: no. turn this on if you want the tool to actually talk to you, because apparently silence wasn't giving ✨
  • -help — display help and exit. the classic. the emergency exit. the "wait how does this work again" button 🎀
  • -version — display version information and exit. for when you need to know exactly which era of GenomeTools you're living in 👑
ngl that's the whole options list. five little entries. petite, powerful, periodt.

😭 REPORTING BUGS 😭

found a bug? don't just sit there screaming into the group chat, actually report it to:

<kurtz@zbh.uni-hamburg.de>

they want to know. they asked. this is your sign 🌈

and that's the whole page!! GenomeTools 1.6.6 🌟 dated 11/09/2025 🎀 mwah, thanks for reading, go compute some shustring length distributions, you absolute icon 💖✨🦋

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