GT-CONGRUENCE-SPAC(1)

📦
version 1.6.6 · 5 versions
, in ubuntu resolute, ubuntu stonking

💖 GT-CONGRUENCE-SPAC 💖

okay bestie, welcome to gt-congruence-spacedseed from the GenomeTools manual — she's a little tool that matches spaced seeds, and no cap she's lowkey iconic. pull up a chair, we're doing this together 🫶

✨ NAME ✨

gt-congruence-spacedseed — Match spaced seeds. that's the whole vibe. she matches spaced seeds, she does it well, periodt 💅

🌸 SYNOPSIS 🌸

gt congruence spacedseed [options]

literally just run it and hand her some [options], that's the energy ✨

🦋 DESCRIPTION 🦋

okay so here's the whole menu of flags, and every single one matters, so don't skip 🙈

  • -esa [string] — Specify index (enhanced suffix array). the default is undefined, so if you don't say anything she's just sitting there with nothing, which is giving chaos tbh 😭
  • -pck [string] — Specify index (packed index). default here is also undefined — yes bestie, same situation, she needs you to actually tell her something 💀
  • -q — Specify files containing the query sequences. this is where your query sequences live, so point her at them 🎀
  • -v [yes|no] — be verbose. default is no, because she's mysterious like that. flip it to yes if you want her yapping about everything she's doing 👑
  • -help — display help and exit. the classic. she tells you what's up and then she's gone 🧚
  • -version — display version information and exit. quick lil flex, then exit 💜

🔥 REPORTING BUGS 🔥

found a bug? don't be shy, tell on her (lovingly). Report bugs to <kurtz@zbh.uni-hamburg.de>. she'll take the feedback fr fr 🍓

okay that's the whole page bestie, you ate that 🎀✨ no notes, go match some spaced seeds 💖

this was GenomeTools 1.6.6, dated 11/09/2025 — mwah, signing off 💅🌈

📦 where this page comes from