GT-READJOINER(1)

📦
version 1.6.6 · 5 versions
, in ubuntu resolute, ubuntu stonking

💖 GT-READJOINER(1) 💖

okay so bestie, welcome to the GenomeTools Manual page for gt-readjoiner — it's giving assembly energy and we're gonna walk through it together, no cap 🧚✨

🌸 NAME 🌸

gt-readjoiner — Readjoiner: a string graph-based sequence assembler. literally what it says on the tin, and it ate 💅

🦋 SYNOPSIS 🦋

gt readjoiner [option ...] tool [argument ...]

so you call gt, you say readjoiner, you drop in some options if you're feeling spicy, then you name your tool and hand it its *argument*s. iconic structure tbh 🎀

✨ DESCRIPTION ✨

here's the tea, the options that are just vibes and nothing else:

  • -help — shows you the help and then dips. that's it, that's the whole thing 👋
  • -version — prints version info and exits. short, sweet, main character behavior 💫

Please consult the Readjoiner manual for more information. (yes bestie, there's a whole other manual, go read it, it's the source of truth fr fr 📖)

🫶 Tools 🫶

these are the three little icons of the pipeline, in order:

  • prefilter — prepare the readset for Readjoiner 🧹✨
  • overlap — calculate suffix-prefix matches 🔍
  • assembly — construct string graph and output contigs 🧬👑

😭 REPORTING BUGS 😭

Report bugs to https://github.com/genometools/genometools/issues — pls pls pls take it to the issue tracker and not to my DMs, the maintainers got you 🫶💀

and that's the whole page bestie, you're so welcome 💖

cute lil sign-off: this gorgeous thing is GenomeTools 1.6.6, dated 11/09/2025, and it lives in the GenomeTools Manual. periodt. 👑🌸🦋

📦 where this page comes from