section 3pm · Library functions 📚

G (continued)

• GO::Handlers::xsl_base(3pm)text HTML handler✨
• GO::IO::Analysis(3pm)preliminary analysis object✨
• GO::IO::Blast(3pm)Gene Ontology Blast Reports DEPRECATED✨
• GO::IO::Dotty(3pm)Dotty diagrams from GO graphs✨
• GO::IO::go_assoc(3pm)dump GO terms as OBD XML✨
• GO::IO::ObanOwl(3pm)dump GO terms as xml✨
• GO::IO::OBDXML(3pm)dump GO terms as xml✨
• GO::IO::RDFXML(3pm)dump GO terms as xml✨
• GO::Metadata::Panther(3pm)Species info for data used by Panther Clusters✨
• GO::Model::Association(3pm)association between a GO term and a gene product✨
• GO::Model::CrossProduct(3pm)intersection between class/term and list of anonymous subclass✨
• GO::Model::DB(3pm)DB class✨
• GO::Model::Evidence(3pm)evidence for an association✨
• GO::Model::GeneProduct(3pm)gene product in a particular species✨
• GO::Model::Graph(3pm)a collection of relationships over terms✨
• GO::Model::GraphIterator(3pm)Graph iterator✨
• GO::Model::GraphNodeInstance(3pm)a graph node located in a tree✨
• GO::Model::LogicalDefinition(3pm)logical definition✨
• GO::Model::Modification(3pm)cross reference to external database✨
• GO::Model::Ontology(3pm)synonym for GO::Model::Graph✨
• GO::Model::Path(3pm)path between two nodes✨
• GO::Model::Property(3pm)model property✨
• GO::Model::Relationship(3pm)relationship between two terms✨
• GO::Model::Restriction(3pm)model restriction✨
• GO::Model::Root(3pm)base class for all GO::Model objects✨
• GO::Model::Seq(3pm)biological sequence✨
• GO::Model::Species(3pm)gene product in a particular species✨
• GO::Model::Term(3pm)a term or concept in an ontology✨
• GO::Model::TreeIterator(3pm)wraps GO::Model::GraphIterator✨
• GO::Model::Xref(3pm)cross reference to an external database✨
• GO::ObjCache(3pm)private method✨
• GO::ObjFactory(3pm)GO Object Factory✨
• GO::Parser(3pm)parses all GO files formats and types✨
• GO::Parsers::base_parser(3pm)base class for parsers✨
• GO::Parsers::generic_tagval_parser(3pm)syntax parsing of GO .def flat files✨
• GO::Parsers::go_assoc_parser(3pm)syntax parsing of GO gene-association flat files✨
• GO::Parsers::go_def_parser(3pm)syntax parsing of GO .def flat files✨
• GO::Parsers::go_ids_parser(3pm)syntax parsing of flat files containing GO IDs.✨
• GO::Parsers::go_ont_parser(3pm)syntax parsing of GO .ontology flat files✨
• GO::Parsers::go_xref_parser(3pm)syntax parsing of GO xref flat files (eg eg2go, metacyc2go)✨
• GO::Parsers::locuslink_parser(3pm)Parser for LocusLink✨
• GO::Parsers::mesh_parser(3pm)Parses Mesh ascii text files✨
• GO::Parsers::mgi_assoc_parser(3pm)parses MGI gene assoc stanza files✨
• GO::Parsers::ncbi_taxon_names_parser(3pm)OBO Flat file parser object✨
• GO::Parsers::ncbi_taxonomy_parser(3pm)Parser for NCBI taxonomy✨
• GO::Parsers::obj_emitter(3pm)Private class✨
• GO::Parsers::obo_text_parser(3pm)OBO Flat file parser object✨
• GO::Parsers::obo_xml_parser(3pm)Parses xml made from events✨
• GO::Parsers::owl_parser(3pm)turns OWL XML into event stream✨
• GO::Parsers::ParserEventNames(3pm)exports constants corresponding to XML✨
• GO::Parsers::references_parser(3pm)syntax parsing of GO.refences files✨
• GO::Parsers::refgenomes_parser(3pm)syntax parsing of GO .def flat files✨
• GO::Parsers::unknown_format_parser(3pm)base class for parsers✨
• GO::Parsers::xrf_abbs_parser(3pm)syntax parsing of GO xrf_abbs flat files✨
• GO::Utils(3pm)utilities for GO modules rearrange() Usage : n/a Function : Rearranges named parameters to requested order. Returns : @params - an array of parameters in the requested order. Argument : $order : a…✨
• Goo::Cairo::Matrix(3pm)wrapper for GooCairoMatrix✨
• Goo::Cairo::Pattern(3pm)wrapper for GooCairoPattern✨
• Goo::Canvas(3pm)wrapper for GooCanvas✨
• Goo::Canvas::Bounds(3pm)✨
• Goo::Canvas::Ellipse(3pm)wrapper for GooCanvasEllipse✨
• Goo::Canvas::EllipseModel(3pm)wrapper for GooCanvasEllipseModel✨
• Goo::Canvas::Group(3pm)wrapper for GooCanvasGroup✨
• Goo::Canvas::GroupModel(3pm)wrapper for GooCanvasGroupModel✨
• Goo::Canvas::Image(3pm)wrapper for GooCanvasImage✨
• Goo::Canvas::ImageModel(3pm)wrapper for GooCanvasImageModel✨
• Goo::Canvas::index(3pm)API Reference Pod Index✨
• Goo::Canvas::Item(3pm)wrapper for GooCanvasItem✨
• Goo::Canvas::ItemModel(3pm)wrapper for GooCanvasItemModel✨
• Goo::Canvas::ItemSimple(3pm)wrapper for GooCanvasItemSimple✨
• Goo::Canvas::LineDash(3pm)wrapper for GooCanvasLineDash✨
• Goo::Canvas::Path(3pm)wrapper for GooCanvasPath✨
• Goo::Canvas::PathModel(3pm)wrapper for GooCanvasPathModel✨
• Goo::Canvas::Points(3pm)wrapper for GooCanvasPoints✨
• Goo::Canvas::Polyline(3pm)wrapper for GooCanvasPolyline✨
• Goo::Canvas::PolylineModel(3pm)wrapper for GooCanvasPolylineModel✨
• Goo::Canvas::Rect(3pm)wrapper for GooCanvasRect✨
• Goo::Canvas::RectModel(3pm)wrapper for GooCanvasRectModel✨
• Goo::Canvas::Style(3pm)wrapper for GooCanvasStyle✨
• Goo::Canvas::Table(3pm)wrapper for GooCanvasTable✨
• Goo::Canvas::TableModel(3pm)wrapper for GooCanvasTableModel✨
• Goo::Canvas::Text(3pm)wrapper for GooCanvasText✨
• Goo::Canvas::TextModel(3pm)wrapper for GooCanvasTextModel✨
• Goo::Canvas::Widget(3pm)wrapper for GooCanvasWidget✨
• GooCanvas2(3pm)Perl binding for GooCanvas2 widget using Glib::Object::Introspection✨
• GooCanvas2::CairoTypes(3pm)Bridge between GooCanvas2 and Cairo types✨
• Google::ProtocolBuffers(3pm)simple interface to Google Protocol Buffers✨
• goto::file(3pm)Stop parsing the current file and move on to a different one.✨
• GPS::Garmin(3pm)Perl interface to GPS equipment using the Garmin Protocol✨
• GPS::Garmin::Handler(3pm)Handlers to Garmin data✨
• GPS::NMEA(3pm)Perl interface to GPS equipment using the NMEA Protocol✨
• GPS::NMEA::Handler(3pm)Handlers to NMEA data✨
• GPS::OID(3pm)Package for GPS PRN - Object ID conversions.✨
• GPS::Point(3pm)Provides an object interface for a GPS point.✨
• GPS::Serial(3pm)Access to the Serial port for the GPS::* modules✨
• Graph(3pm)graph data structures and algorithms✨
• Graph::AdjacencyMap(3pm)map of graph vertices or edges✨
• Graph::AdjacencyMatrix(3pm)create and query the adjacency matrix of graph G✨
• Graph::BitMatrix(3pm)create and manipulate a V x V bit matrix of graph G✨
• Graph::D3(3pm)Create ref/json to show node-edge graph with D3.js✨
• Graph::Directed(3pm)directed graphs✨
• Graph::Easy(3pm)Convert or render graphs (as ASCII, HTML, SVG or via Graphviz)✨
• Graph::Easy::As_ascii(3pm)Generate ASCII art✨
• Graph::Easy::As_graphml(3pm)Generate a GraphML text from a Graph::Easy object✨
• Graph::Easy::As_graphviz(3pm)Generate graphviz description from graph object✨
• Graph::Easy::As_svg(3pm)Output a Graph::Easy as Scalable Vector Graphics (SVG)✨
• Graph::Easy::As_txt(3pm)Generate textual description from graph object✨
• Graph::Easy::As_vcg(3pm)Generate VCG/GDL text from Graph::Easy object✨
• Graph::Easy::Attributes(3pm)Define and check attributes for Graph::Easy✨
• Graph::Easy::Base(3pm)base class for Graph::Easy objects like nodes, edges etc✨
• Graph::Easy::Edge(3pm)An edge (a path connecting one ore more nodes)✨
• Graph::Easy::Edge::Cell(3pm)A cell in an edge in Graph::Easy✨
• Graph::Easy::Group(3pm)A group of nodes (aka subgraph) in Graph::Easy✨
• Graph::Easy::Group::Anon(3pm)An anonymous group of nodes in Graph::Easy✨
• Graph::Easy::Group::Cell(3pm)A cell in a group✨
• Graph::Easy::Layout(3pm)Layout the graph from Graph::Easy✨
• Graph::Easy::Layout::Chain(3pm)Chain of nodes for layouter✨
• Graph::Easy::Layout::Force(3pm)Force-based layouter for Graph::Easy✨
• Graph::Easy::Layout::Grid(3pm)Grid management and size calculation✨
• Graph::Easy::Layout::Path(3pm)Path management for Manhattan-style grids✨
• Graph::Easy::Layout::Repair(3pm)Repair spliced layout with group cells✨
• Graph::Easy::Layout::Scout(3pm)Find paths in a Manhattan-style grid✨
• Graph::Easy::Node(3pm)Represents a node in a Graph::Easy graph✨
• Graph::Easy::Node::Anon(3pm)An anonymous, invisible node in Graph::Easy✨
• Graph::Easy::Node::Cell(3pm)An empty filler cell✨
• Graph::Easy::Node::Empty(3pm)An empty, borderless cell in a node cluster✨
• Graph::Easy::Parser(3pm)Parse Graph::Easy from textual description✨
• Graph::Easy::Parser::Graphviz(3pm)Parse Graphviz text into Graph::Easy✨
• Graph::Easy::Parser::VCG(3pm)Parse VCG or GDL text into Graph::Easy✨
• Graph::Easy::Util(3pm)✨
• Graph::Grammar(3pm)Graph grammar, i.e. rewriting method✨
• Graph::Maker(3pm)Create many types of graphs✨
• Graph::Maker::BalancedTree(3pm)Creates a balanced tree with specified fan out and height✨
• Graph::Maker::Barbell(3pm)Create barbell graphs✨
• Graph::Maker::Bipartite(3pm)Creates a bipartite graph with a given distribution.✨
• Graph::Maker::CircularLadder(3pm)Create a circular ladder✨
• Graph::Maker::Complete(3pm)Create complete (fully-connected) graphs✨
• Graph::Maker::CompleteBipartite(3pm)Creates a complete bipartite graph.✨
• Graph::Maker::Cycle(3pm)Create a graph consisting of a cycle.✨
• Graph::Maker::Degree(3pm)Creates a graph from a degree distribution.✨
• Graph::Maker::Disconnected(3pm)Create a graph with no edges✨
• Graph::Maker::Disk(3pm)Creates a graph with nodes positioned in concentric connected rings.✨
• Graph::Maker::Empty(3pm)Creates an graph with no nodes or edges✨
• Graph::Maker::Grid(3pm)Creates a graph in a d-dimensional grid.✨
• Graph::Maker::Hypercube(3pm)Create the N-dimensional hypercube graph✨
• Graph::Maker::Ladder(3pm)Creates a ladder graph.✨
• Graph::Maker::Linear(3pm)Create a linear graph.✨
• Graph::Maker::Lollipop(3pm)Creates a lollipop graph.✨
• Graph::Maker::Random(3pm)Creates a random graph (using Erdos Renyi or with a specified number of edges)✨
• Graph::Maker::Regular(3pm)Creates a k-regular graph.✨
• Graph::Maker::SmallWorldBA(3pm)Creates a small world graph according to the Barabási-Albert preferential attachment model.✨
• Graph::Maker::SmallWorldHK(3pm)Creates a small world graph according to Holmea, Beom & Kim✨
• Graph::Maker::SmallWorldK(3pm)Creates a small world graph using Kleinberg's model in 2-dimensions✨
• Graph::Maker::SmallWorldWS(3pm)Creates a small-world graph according to (Newman) Watt and Strogatz✨
• Graph::Maker::Star(3pm)Creates a star graph.✨
• Graph::Maker::Uniform(3pm)Creates a graph distributed randomly over the d-dimensional grid.✨
• Graph::Maker::Utils(3pm)Small routines that Graph::Maker::* uses.✨
• Graph::Maker::Wheel(3pm)Creates a wheel graph.✨
• Graph::Matrix(3pm)create and manipulate a V x V matrix of graph G✨
• Graph::MoreUtils(3pm)utilities for graphs✨
• Graph::MoreUtils::Line::SelfLoopVertex(3pm)marker for artificial self-loops✨
• Graph::Nauty(3pm)Perl bindings for Nauty✨
• Graph::Reader(3pm)base class for Graph file format readers✨
• Graph::Reader::Dot(3pm)class for reading a Graph instance from Dot format✨
• Graph::Reader::HTK(3pm)read an HTK lattice in as an instance of Graph✨
• Graph::Reader::XML(3pm)class for reading a Graph instance from XML✨
• Graph::ReadWrite(3pm)modules for reading and writing directed graphs✨
• Graph::TransitiveClosure(3pm)create and query transitive closure of graph✨
• Graph::TransitiveClosure::Matrix(3pm)create and query transitive closure of graph✨
• Graph::Traversal(3pm)traverse graphs✨
• Graph::Traversal::BFS(3pm)breadth-first traversal of graphs✨
• Graph::Traversal::DFS(3pm)depth-first traversal of graphs✨
• Graph::Undirected(3pm)undirected graphs✨
• Graph::UnionFind(3pm)union-find data structures✨
• Graph::VF2(3pm)VF2 subgraph isomorphism detection method for Perl Graph✨
• Graph::Writer(3pm)base class for Graph file format writers✨
• Graph::Writer::daVinci(3pm)write out directed graph in daVinci format✨
• Graph::Writer::Dot(3pm)write out directed graph in Dot format✨
• Graph::Writer::DSM(3pm)draw graph as a DSM matrix✨
• Graph::Writer::DSM::HTML(3pm)draw graph as a DSM matrix in HTML format✨
• Graph::Writer::GraphViz(3pm)GraphViz Writer for Graph object✨
• Graph::Writer::HTK(3pm)write a perl Graph out as an HTK lattice file✨
• Graph::Writer::VCG(3pm)write out directed graph in VCG format✨
• Graph::Writer::XML(3pm)write out directed graph as XML✨
• Graphics::Color(3pm)Device and library agnostic color spaces.✨
• Graphics::Color::CMYK(3pm)CMYK color model✨
• Graphics::Color::Equal(3pm)Moose equality role✨
• Graphics::Color::HSL(3pm)HSL color space✨
• Graphics::Color::HSV(3pm)HSV color space✨
• Graphics::Color::RGB(3pm)RGB color model✨
• Graphics::Color::Types(3pm)define Moose types Number360OrLess and NumberOneOrLess✨
• Graphics::Color::YIQ(3pm)YIQ color space✨
• Graphics::Color::YUV(3pm)YUV color space✨
• Graphics::ColorNames(3pm)defines RGB values for common color names✨
• Graphics::ColorNames::CSS(3pm)CSS color names and equivalent RGB values✨
• Graphics::ColorNames::HTML(3pm)HTML color names and equivalent RGB values✨
• Graphics::ColorNames::IE(3pm)MS Internet Explorer color names and equivalent RGB values✨
• Graphics::ColorNames::SVG(3pm)SVG color names and equivalent RGB values✨
• Graphics::ColorNames::WWW(3pm)WWW color names and equivalent RGB values✨
• Graphics::ColorNames::X(3pm)X-Windows color names and equivalent RGB values✨
• Graphics::ColorNamesLite::WWW(3pm)WWW color names and equivalent RGB values (lite version)✨