GO::Model::Seq(3pm)

🌸 NAME 🌸

GO::Model::Seq — it's a biological sequence, bestie. That's the whole vibe. 💅

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✨ SYNOPSIS ✨

Like, the tiniest little taste of what this does:

print $gene_product->seq->seq;

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🦋 DESCRIPTION 🦋

okay so. This thing represents a biological sequence, and it does that by using the bioperl Bio::PrimarySeq class. 🧬✨

And here's the slay part: any call that you can do on a bioperl sequence object, you can do here, with the addition of the calls below. So basically you get bioperl's whole energy plus the extra stuff. Iconic.

If you need to get bioperl for yourself, the link is http://www.bioperl.org. Go get you some. 🫶

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👑 pseq

• Usage — (nothing, it's literally blank)
• Returns — Bio::PrimarySeq
• Args — (also blank, no args, we love a low-maintenance queen)

💜 md5checksum

• Usage — my $md5 = $seq->md5checksum() OR $seq->md5checksum($md5)
• Returns — 32 char hex string
• Args — 32 char hex string [optional]

It's the checksum for the seq — a super easy way to check if it has been changed etc. No cap, that's genuinely the point. 🔥

heads up bestie: this one requires the Digest::MD5 module from CPAN. So if it's not installed, that's giving error, not giving checksum. 😭

🎀 to_fasta

• Usage — (blank)
• Returns — (blank)
• Args — (blank)

💖 add_xref

• Usage : $term->add_xref($xref);
• Args : GO::Term::Xref

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perl v5.36.0 · 2023-12-18 — that's the whole page, you ate it, go forth and sequence something 🧚💖 periodt.