📦 libbio-db-gff-perl

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• Bio::DB::GFF(3pm)Storage and retrieval of sequence annotation data✨
• Bio::DB::GFF::Adaptor::berkeleydb(3pm)Bio::DB::GFF database adaptor for in-memory databases✨
• Bio::DB::GFF::Adaptor::berkeleydb::iterator(3pm)iterator for Bio::DB::GFF::Adaptor::berkeleydb✨
• Bio::DB::GFF::Adaptor::biofetch(3pm)Cache BioFetch objects in a Bio::DB::GFF database✨
• Bio::DB::GFF::Adaptor::biofetch_oracle(3pm)Cache BioFetch objects in a Bio::DB::GFF database✨
• Bio::DB::GFF::Adaptor::dbi(3pm)Database adaptor for DBI (SQL) databases✨
• Bio::DB::GFF::Adaptor::dbi::caching_handle(3pm)Cache for database handles✨
• Bio::DB::GFF::Adaptor::dbi::iterator(3pm)iterator for Bio::DB::GFF::Adaptor::dbi✨
• Bio::DB::GFF::Adaptor::dbi::mysql(3pm)Database adaptor for a specific mysql schema✨
• Bio::DB::GFF::Adaptor::dbi::mysqlcmap(3pm)Database adaptor for an integraded CMap/GBrowse mysql schema✨
• Bio::DB::GFF::Adaptor::dbi::mysqlopt(3pm)Deprecated database adaptor✨
• Bio::DB::GFF::Adaptor::dbi::oracle(3pm)Database adaptor for a specific oracle schema✨
• Bio::DB::GFF::Adaptor::dbi::pg(3pm)Database adaptor for a specific postgres schema✨
• Bio::DB::GFF::Adaptor::dbi::pg_fts(3pm)Database adaptor for a specific postgres schema with a TSearch2 implementation✨
• Bio::DB::GFF::Adaptor::memory(3pm)Bio::DB::GFF database adaptor for in-memory databases✨
• Bio::DB::GFF::Adaptor::memory::feature_serializer(3pm)utility methods for serializing and deserializing GFF features✨
• Bio::DB::GFF::Adaptor::memory::iterator(3pm)iterator for Bio::DB::GFF::Adaptor::memory✨
• Bio::DB::GFF::Aggregator(3pm)Aggregate GFF groups into composite features✨
• Bio::DB::GFF::Aggregator::alignment(3pm)Alignment aggregator✨
• Bio::DB::GFF::Aggregator::clone(3pm)Clone aggregator✨
• Bio::DB::GFF::Aggregator::coding(3pm)The Coding Region Aggregator✨
• Bio::DB::GFF::Aggregator::gene(3pm)Sequence Ontology Geene✨
• Bio::DB::GFF::Aggregator::match(3pm)Match aggregator✨
• Bio::DB::GFF::Aggregator::none(3pm)No aggregation✨
• Bio::DB::GFF::Aggregator::orf(3pm)An aggregator for orf regions✨
• Bio::DB::GFF::Aggregator::processed_transcript(3pm)Sequence Ontology Transcript✨
• Bio::DB::GFF::Aggregator::so_transcript(3pm)Sequence Ontology Transcript✨
• Bio::DB::GFF::Aggregator::transcript(3pm)Transcript aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_acembly(3pm)UCSC acembly aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_ensgene(3pm)UCSC ensGene aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_genscan(3pm)UCSC genscan aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_refgene(3pm)UCSC refGene aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_sanger22(3pm)UCSC sanger22 aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo(3pm)UCSC sanger22pseudo aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_softberry(3pm)UCSC softberry aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_twinscan(3pm)UCSC twinscan aggregator✨
• Bio::DB::GFF::Aggregator::ucsc_unigene(3pm)UCSC UniGene aggregator✨
• Bio::DB::GFF::Featname(3pm)The name of a feature✨
• Bio::DB::GFF::Feature(3pm)A relative segment identified by a feature type✨
• Bio::DB::GFF::Homol(3pm)A segment of DNA that is homologous to another✨
• Bio::DB::GFF::RelSegment(3pm)Sequence segment with relative coordinate support✨
• Bio::DB::GFF::Segment(3pm)Simple DNA segment object✨
• Bio::DB::GFF::Typename(3pm)The name of a feature type✨
• bp_bulk_load_gff(1p)Bulk-load a Bio::DB::GFF database from GFF files.✨
• bp_fast_load_gff(1p)Fast-load a Bio::DB::GFF database from GFF files.✨
• bp_genbank2gff(1p)Load a Bio::DB::GFF database from GENBANK files.✨
• bp_generate_histogram(1p)Generate a histogram of Bio::DB::GFF features✨
• bp_load_gff(1p)Load a Bio::DB::GFF database from GFF files.✨
• bp_meta_gff(1p)Get/set Bio::DB::GFF meta-data✨