Bio::D...winscan(3pm)

📦
version 1.7.4 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💫 Bio::DB::GFF::Aggregator::ucsc_twinscan — the UCSC twinscan aggregator, bestie edition 🎀

okay so this is Bio::D...winscan(3pm), from the User Contributed Perl Documentation corner of the universe, and it's literally the twinscan aggregator for UCSC stuff. sit down, grab a strawberry 🍓, and let's get into it.

✨ SYNOPSIS ✨

here's the vibe, copy-paste ready, no cap:

use Bio::DB::GFF;

# Open the sequence database
my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                 -dsn     => 'dbi:mysql:elegans42',
                                 -aggregator => ['transcript','clone'],
                               );

-------------------------------------------------
Aggregator method: twinscan
Main method:       transcript
Sub methods:       twinscan
-------------------------------------------------

like yes, that's the whole flex. 🫶

🌸 DESCRIPTION 🌸

Bio::DB::GFF::Aggregator::transcript

that's it, that's the description. iconic, honestly. 💅

🦋 method

  • Title : method
  • Usage : $aggregator->method
  • Function : returns the method for the composite object
  • Returns : the string "twinscan"
  • Args : none
  • Status : Public

🦋 part_names

  • Title : part_names
  • Usage : $aggregator->part_names
  • Function : returns the methods for the sub-parts
  • Returns : empty list
  • Args : none
  • Status : Public

🦋 main_name

  • Title : main_name
  • Usage : $aggregator->main_name
  • Function : returns the method for the main component
  • Returns : the string "transcript:twinscan"
  • Args : none
  • Status : Public

💀 BUGS 💀

None reported.

not a single one, bestie. the bug tracker is quiet. main character energy fr fr. ✨

🔥 SEE ALSO 🔥

  • Bio::DB::GFF
  • Bio::DB::GFF::Aggregator

👑 AUTHOR 👑

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

and that's the whole page, bestie 💖 this was Bio::D...winscan(3pm) from perl v5.30.0, dated 2020-01-13, straight out of the User Contributed Perl Documentation. slay, go aggregate something. 🧚🌈⭐

📦 where this page comes from