Bio::D...nigene(3pm)
π Bio::DB::GFF::Aggregator::ucsc_unigene π
okay so bestie, you're looking at the UCSC UniGene aggregator from the Bio::DB::GFF family β it's part of the User Contributed Perl Documentation situation, and it's lowkey iconic for what it does. come sit with me, this one's short and sweet. π
β¨ SYNOPSIS β¨
here's the whole vibe, copy-paste ready:
use Bio::DB::GFF;
# Open the sequence database
my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
-dsn => 'dbi:mysql:elegans42',
-aggregator => ['transcript','clone'],
);
-------------------------------------------------
Aggregator method: unigene
Main method: transcript
Sub methods: unigene_2
-------------------------------------------------
see that little box at the bottom? that's the whole personality of this module laid out for you: the aggregator method is unigene, the main method is transcript, and there's exactly one sub method, unigene_2. that's it, that's the tea. π«β¨
πΈ DESCRIPTION πΈ
Bio::DB::GFF::Aggregator::transcript β yes, that's literally what the description says, and we are not arguing with the source material, bestie. π
π¦ method
- Title β
method - Usage β
$aggregator->method - Function β hands you back the method for the composite object
- Returns β the string
"unigene" - Args β none, it needs nothing from you
- Status β Public π
π¦ part_names
- Title β
part_names - Usage β
$aggregator->part_names - Function β returns the methods for the sub-parts
- Returns β an empty list (yes, empty. nothing. void. the silence is the point π)
- Args β none
- Status β Public
π¦ main_name
- Title β
main_name - Usage β
$aggregator->main_name - Function β returns the method for the main component
- Returns β the string
"transcript" - Args β none
- Status β Public
π BUGS π
None reported. zero. nada. not a single one has been reported, so we're all just living our truth here. π
π₯ SEE ALSO π₯
go touch grass in these other modules when you're done:
Bio::DB::GFFBio::DB::GFF::Aggregator
π AUTHOR π
Allen Day <allenday@ucla.edu> β the main character who wrote this fr fr.
Copyright (c) 2002 Allen Day, University of California, Los Angeles.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. so yes, go off, remix it, that's allowed. π
and that's a wrap, bestie π«Ά this was perl v5.30.0, dated 2020-01-13, from the Bio::D...nigene(3pm) era β still cute, still valid, still serving. mwah. πβ¨
π¦ where this page comes from
- debian bookworm: libbio-db-gff-perl 1.7.4-1 Β· Artistic-1.0-Perl OR GPL-1.0-or-later
- debian trixie: libbio-db-gff-perl 1.7.4-1 Β· Artistic-1.0-Perl OR GPL-1.0-or-later
- ubuntu jammy: libbio-db-gff-perl 1.7.4-1 Β· Artistic-1.0-Perl OR GPL-1.0-or-later
- ubuntu noble: libbio-db-gff-perl 1.7.4-1 Β· Artistic-1.0-Perl OR GPL-1.0-or-later
- π girlified by deepseek-ai/DeepSeek-V4.1-Flash on : a language model's rewrite of the original, under its terms