Bio::D...nigene(3pm)

πŸ“¦
version 1.7.4 Β· 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

πŸ’– Bio::DB::GFF::Aggregator::ucsc_unigene πŸ’–

okay so bestie, you're looking at the UCSC UniGene aggregator from the Bio::DB::GFF family β€” it's part of the User Contributed Perl Documentation situation, and it's lowkey iconic for what it does. come sit with me, this one's short and sweet. πŸŽ€


✨ SYNOPSIS ✨

here's the whole vibe, copy-paste ready:

  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
                                   -aggregator => ['transcript','clone'],
                                 );

 -------------------------------------------------
 Aggregator method: unigene
 Main method:       transcript
 Sub methods:       unigene_2
 -------------------------------------------------

see that little box at the bottom? that's the whole personality of this module laid out for you: the aggregator method is unigene, the main method is transcript, and there's exactly one sub method, unigene_2. that's it, that's the tea. πŸ«–βœ¨


🌸 DESCRIPTION 🌸

Bio::DB::GFF::Aggregator::transcript β€” yes, that's literally what the description says, and we are not arguing with the source material, bestie. πŸ’…

πŸ¦‹ method

  • Title β€” method
  • Usage β€” $aggregator->method
  • Function β€” hands you back the method for the composite object
  • Returns β€” the string "unigene"
  • Args β€” none, it needs nothing from you
  • Status β€” Public πŸ‘‘

πŸ¦‹ part_names

  • Title β€” part_names
  • Usage β€” $aggregator->part_names
  • Function β€” returns the methods for the sub-parts
  • Returns β€” an empty list (yes, empty. nothing. void. the silence is the point 😭)
  • Args β€” none
  • Status β€” Public

πŸ¦‹ main_name

  • Title β€” main_name
  • Usage β€” $aggregator->main_name
  • Function β€” returns the method for the main component
  • Returns β€” the string "transcript"
  • Args β€” none
  • Status β€” Public

πŸ’€ BUGS πŸ’€

None reported. zero. nada. not a single one has been reported, so we're all just living our truth here. πŸ™ˆ

πŸ”₯ SEE ALSO πŸ”₯

go touch grass in these other modules when you're done:

  • Bio::DB::GFF
  • Bio::DB::GFF::Aggregator

πŸ‘‘ AUTHOR πŸ‘‘

Allen Day <allenday@ucla.edu> β€” the main character who wrote this fr fr.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. so yes, go off, remix it, that's allowed. 🌈


and that's a wrap, bestie 🫢 this was perl v5.30.0, dated 2020-01-13, from the Bio::D...nigene(3pm) era β€” still cute, still valid, still serving. mwah. πŸ’–βœ¨

πŸ“¦ where this page comes from