Bio::D...enscan(3pm)

📦
version 1.7.4 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💖 Bio::D...enscan(3pm) 💖

okay bestie, so this is a page from the User Contributed Perl Documentation set — it's Bio::D...enscan(3pm) and honestly? it's a tiny little diva of a module. let's get into it 🎀

✨ NAME ✨

Bio::DB::GFF::Aggregator::ucsc_genscan — the UCSC genscan aggregator, no cap 💅

🌸 SYNOPSIS 🌸

okay so first you gotta bring in the goods:

use Bio::DB::GFF;

# Open the sequence database
my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                 -dsn     => 'dbi:mysql:elegans42',
                                 -aggregator => ['transcript','clone'],
                               );

and here's the little vibe check of what this aggregator is actually doing:

-------------------------------------------------
Aggregator method: genscan
Main method:       transcript
Sub methods:       genscan
-------------------------------------------------

like, main character = transcript, sub method = genscan, aggregator method = genscan. iconic honestly 🫶

🦋 DESCRIPTION 🦋

Bio::DB::GFF::Aggregator::transcript — yes that's what the original says, and yes it's the transcript-flavored description sitting under a genscan-named module. we keep it exactly as-is, periodt 💜

🎀 method

  • Title : method
  • Usage : $aggregator->method
  • Function: return the method for the composite object
  • Returns : the string "genscan"
  • Args : none
  • Status : Public

🎀 part_names

  • Title : part_names
  • Usage : $aggregator->part_names
  • Function: return the methods for the sub-parts
  • Returns : empty list
  • Args : none
  • Status : Public

🎀 main_name

  • Title : main_name
  • Usage : $aggregator->main_name
  • Function: return the method for the main component
  • Returns : the string "transcript:genscan"
  • Args : none
  • Status : Public

💀 BUGS 💀

None reported. she's behaving. for now. 🙈

🌈 SEE ALSO 🌈

  • Bio::DB::GFF
  • Bio::DB::GFF::Aggregator

go read those next bestie, iykyk 💖

👑 AUTHOR 👑

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

and that's the whole page, babe ✨ this was perl v5.30.0, dated 2020-01-13 — mwah, love that for us 💅🌸

📦 where this page comes from