Bio::D...cembly(3pm)

💖 NAME 💖

Bio::DB::GFF::Aggregator::ucsc_acembly — it's the UCSC acembly aggregator, bestie, and yes that's the whole vibe. This page comes to you straight from the User Contributed Perl Documentation (so you know it's the people's docs 💅) under the title Bio::D...cembly(3pm).

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✨ SYNOPSIS ✨

okay so here's the whole flex, copy it exactly:

  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
                                   -aggregator => ['transcript','clone'],
                                 );

 -------------------------------------------------
 Aggregator method: transcript
 Main method:       transcript
 Sub methods:       exon CDS 5'UTR 3'UTR TSS PolyA
 -------------------------------------------------

so you open the sequence database, you pass -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42' and -aggregator => ['transcript','clone'], and the aggregator method lineup is right there: aggregator method transcript, main method transcript, sub methods exon CDS 5'UTR 3'UTR TSS PolyA. iconic honestly 🎀

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🌸 DESCRIPTION 🌸

Bio::DB::GFF::Aggregator::transcript — that's literally what the page says, no I'm not fixing it, I'm just the messenger 🫶

💅 method

• Title: method
• Usage: $aggregator->method
• Function: returns the method for the composite object, i.e. it tells you which method made the whole thing
• Returns: the string "acembly"
• Args: none
• Status: Public

🦋 part_names

• Title: part_names
• Usage: $aggregator->part_names
• Function: returns the methods for the sub-parts
• Returns: empty list (yeah, literally nothing, and that's the point ✨)
• Args: none
• Status: Public

🌈 main_name

• Title: main_name
• Usage: $aggregator->main_name
• Function: returns the method for the main component
• Returns: the string "transcript:acembly"
• Args: none
• Status: Public

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💀 BUGS 💀

None reported. not one. zero. the bug list is giving absolutely nothing and we love that for it 🙈

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🔥 SEE ALSO 🔥

• Bio::DB::GFF
• Bio::DB::GFF::Aggregator

go read those next, bestie, for the full lore 🧚

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👑 AUTHOR 👑

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

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and that's the whole page, fr fr 💜 this was perl v5.30.0, dated 2020-01-13, filed under Bio::D...cembly(3pm) — go forth and aggregate, you absolute main character ⭐