BP_GEN...STOGRAM(1p)

💖 BP_GEN...STOGRAM(1p) 💖

okay bestie, so this is a User Contributed Perl Documentation page for bp_generate_histogram.pl, and it's lowkey one of those little utilities that just does the thing. let's get into it ✨

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🌸 NAME 🌸

bp_generate_histogram.pl — generate a histogram of Bio::DB::GFF features. that's it, that's the whole vibe. a little script that makes histograms, no cap 🎀

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🦋 SYNOPSIS 🦋

bp_generate_histogram.pl -d gadfly variation gene:curated

that's the whole invocation, periodt. look at her go 💅

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✨ DESCRIPTION ✨

so here's the tea: you use this utility to generate feature density histograms from Bio::DB::GFF databases. it's giving data-girlie main character energy fr fr 🌈

and the result? a GFF data file — which is literally perfect for loading with load_gff.pl. so like, generate the histogram, get your GFF, go load it. chef's kiss 🫶

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🎀 OPTIONS 🎀

the following options are recognized, and yes we're listing every single one because we don't gatekeep here:

• --dsn <dsn> — the data source. default is dbi:mysql:test 💜
• --adaptor <adaptor> — the schema adaptor. default is dbi::mysqlopt ✨
• --user <user> — username for mysql authentication 🍓
• --pass <password> — password for mysql authentication 🔐
• --aggregator <list> — a comma-separated list of aggregators. that's right, comma-separated, don't come at me with spaces 💅

ngl, --pass is literally your password sitting right there on the command line. the manpage doesn't say anything about that, so I'm just gonna say it's giving "exposed" and move on 🙈

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💀 BUGS 💀

please report them. that's the whole section bestie, they really just said "please report them" and dipped 😭 iconic honestly.

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🔥 SEE ALSO 🔥

• Bio::DB::GFF — go read that one next, it's the main character of this whole saga 👑

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👑 AUTHOR 👑

Lincoln Stein <lstein@cshl.org> 💖

Copyright (c) 2001 Cold Spring Harbor Laboratory 🧬

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. ⭐

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perl v5.30.0 🌸 2020-01-13 — and that's the date stamp bestie, we're all caught up, go generate some histograms and slay 💅✨💖