Bio::D...tberry(3pm)

💖 Bio::DB::GFF::Aggregator::ucsc_softberry 💖

okay so bestie, welcome to the UCSC softberry aggregator page 💅 this one lives in the Bio::D...tberry(3pm) corner of the User Contributed Perl Documentation universe, and it's literally so chill. let's get into it 🫶

---

✨ SYNOPSIS ✨

here's the vibe, copy-paste ready, no cap:

  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
                                   -aggregator => ['transcript','clone'],
                                 );

and here's the little cheat-sheet block that tells you what this aggregator is actually doing 👑

-------------------------------------------------
Aggregator method: softberry
Main method:       transcript
Sub methods:       softberryGene
-------------------------------------------------

like. it's giving structure. it's giving softberry being the aggregator, transcript being the main method, and softberryGene riding along as the sub method 🌸

---

🌈 DESCRIPTION 🌈

Bio::DB::GFF::Aggregator::transcript — yes that's what it says, we don't question the ancestors, we just report the facts 💀

---

🎀 method 🎀

• Title: method
• Usage: $aggregator->method
• Function: return the method for the composite object
• Returns: the string "softberry"
• Args: none
• Status: Public

---

🦋 part_names 🦋

• Title: part_names
• Usage: $aggregator->part_names
• Function: return the methods for the sub-parts
• Returns: empty list
• Args: none
• Status: Public

---

⭐ main_name ⭐

• Title: main_name
• Usage: $aggregator->main_name
• Function: return the method for the main component
• Returns: the string "transcript:softberryGene"
• Args: none
• Status: Public

---

💀 BUGS 💀

None reported. we love a clean record, periodt ✨

---

👀 SEE ALSO 👀

• Bio::DB::GFF
• Bio::DB::GFF::Aggregator

go read those next bestie, iykyk 🫶

---

💜 AUTHOR 💜

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

---

and that's the whole page, angel 🧚 this was perl v5.30.0, dated 2020-01-13, coming at you straight from the Bio::D...tberry(3pm) manual — slay, bye 💖🎀🌈