📦 reapr

R

• reapr(1)universal tool for genome assembly evaluation✨
• reapr-break(1)make broken assembly via REAPR✨
• reapr-facheck(1)checks IDs in fasta file✨
• reapr-gapresize(1)calculates gap sizes based on read mapping✨
• reapr-perfectfrombam(1)generate perfect mapping plots from a bam file✨
• reapr-perfectmap(1)make perfect uniquely mapping plot files✨
• reapr-pipeline(1)run the REAPR pipeline✨
• reapr-plots(1)makes Artemis plot files for a given contig✨
• reapr-preprocess(1)preprocess files for REAPR run✨
• reapr-score(1)calculate scores and assembly errors✨
• reapr-seqrename(1)renames all sequences in a BAM file✨
• reapr-smaltmap(1)map read pairs using SMALT✨
• reapr-stats(1)generate REAPR stats from a BAM file✨
• reapr-summary(1)make REAPR summary stats file✨