REAPR-GAPRESIZE(1)

✨ REAPR-GAPRESIZE(1) ✨

okay bestie, gather round, because we're talking about reapr-gapresize — she's the little helper that calculates gap sizes based on read mapping. that's the whole vibe. no cap. 💅

---

🌸 NAME 🌸

reapr-gapresize — calculates gap sizes based on read mapping 🧚

---

🦋 SYNOPSIS 🦋

reapr gapresize [options] <assembly.fasta> <in.bam>
<avg-fragment-length> <max-fragment-length> <outfileprefix>

yes, that's a whole lot of arguments and she will be expecting every single one of them. no skips. periodt. ✨

---

💖 OPTIONS 💖

• -g <int> — literally the only option, and she's serving minimalism. only consider gaps of at least this length. and the default? [1]. so if you don't pass -g, she's out here looking at gaps of length 1 and up. iconic behaviour honestly. 👑

---

🫶 SEE ALSO 🫶

• reapr(1) — go read about the main character, iykyk 🌈

---

lowkey reminder: the args go in order — assembly.fasta, then in.bam, then avg-fragment-length, then max-fragment-length, then outfileprefix. five slots, no substitutions, she's not flexible about it. 😭

---

mwah 💜 that's the whole page. and for the sign-off: the footer is just REAPR-GAPRESIZE(1) echoing the title right back at you — no extra source, version, or date energy in there, so don't go looking for one. bye bestie, slay your gaps 🎀🌸💖