REAPR-SUMMARY(1)

✨ REAPR-SUMMARY ✨

okay bestie, pull up a chair, because we're talking about reapr-summary — the lil' manual page from the REAPR fam (that's section 1 of the manual, iykyk) that makes you a REAPR summary stats file 🎀

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💖 NAME 💖

reapr-summary — literally just here to make the REAPR summary stats file. that's the whole job. she's not doing extra credit, she's doing exactly this 💅

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🌸 SYNOPSIS 🌸

reapr summary [options] <assembly.fa> <scoreprefix> <breakprefix> <outfileprefix>

so you run it like that, with your assembly and your three lil' prefixes, and it does the thing 🫶

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🦋 DESCRIPTION 🦋

okay so here's the tea on the two prefix arguments, because they are not interchangeable:

• <scoreprefix> — this is the outfiles prefix you used back when you ran score. yes, that score. the one you already ran. this is its leftover naming scheme 🌈
• <breakprefix> — and this one is the outfiles prefix you used when you ran break. same deal, different tool 💫

so basically reapr-summary is the girl who goes around collecting everybody's receipts. you ran score, you ran break, and now she needs to know what you named everything so she can find it. no cap 🧚

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💅 OPTIONS 💅

• -e <float> — Minimum FCD error [0]

that's it. that's the one option. she said "one setting, take it or leave it" 👑

heads up bestie: the default for -e is [0], so if you don't pass it, you're rolling with 0 as your minimum FCD error. set it yourself if you want something different 💀

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🔥 SEE ALSO 🔥

• reapr(1)

go check out the main reapr(1) page for the rest of the lore, because this one is just the summary-making side quest ⭐

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and that's a wrap, babe 🎀 this was the REAPR-SUMMARY(1) manual page — yeah, the footer literally just says REAPR-SUMMARY(1) and nothing else, no version stamp, no date, she's mysterious like that 🙈 go make your summary stats file, you got this 💜