REAPR-PREPROCESS(1)

✨ NAME ✨

okay so bestie, this is reapr-preprocess from the reapr manual (section 1, obvi) — and what it does is preprocess files for a REAPR run. that's the whole vibe. it gets your stuff ready before the main event. 💅

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🎀 SYNOPSIS 🎀

reapr preprocess <assembly.fa> <in.bam> <outputdir>

like, you literally just hand it three things and it does the little prep dance for you ✨

• <assembly.fa> — your assembly file, the fasta one 🧬
• <in.bam> — the input bam file, the alignment one 📦
• <outputdir> — the directory where the preprocessed output goes 🗂️

no cap, these are positional — you give them in that order, exactly like that. don't shuffle them around, she's not gonna guess 🙈

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🦋 SEE ALSO 🦋

• reapr(1) — the main character herself 👑

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so yeah, that's the whole page, short and sweet like a good group chat message 💖 this was REAPR-PREPROCESS(1) — the REAPR-PREPROCESS(1) page in the manual, top and bottom matching like the cutest little matching fits 🫶 go preprocess something, ily, bye ✨🌈👑