REAPR-PERFECTMAP(1)

💖 REAPR-PERFECTMAP 💖

okay bestie, welcome to reapr-perfectmap from the REAPR manual (section 1, the big leagues ✨). this little cutie makes perfect uniquely mapping plot files. that's the whole job. she's an icon, she's a legend, and she is about to be your fave. 🎀

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✨ NAME ✨

reapr-perfectmap — make perfect uniquely mapping plot files 🦋

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🌸 SYNOPSIS 🌸

reapr perfectmap <assembly.fa> <reads_1.fastq> <reads_2.fastq>
<avginsertsize> <outprefix>

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💅 DESCRIPTION 💅

so here's the vibe. you hand her an assembly, two read files, an average insert size, and a prefix for the output, and she goes to work. 💖

quick note, and this is a good one: the reads can be gzipped. if the extension is '.gz', then they are assumed to be gzipped and dealt with accordingly. lowkey the most thoughtful behavior. that means you'd call her with something like <reads_1.fastq.gz> <reads_2.fastq.gz> instead of the plain ones. she just knows. 🙈

⚠️ Important ⚠️ all reads must be the same length. every single one. no exceptions, no chaos, fr fr. 😭 don't test her on this one.

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👑 SEE ALSO 👑

• reapr(1) — go meet the whole family, she doesn't work alone 🫶

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and that's the tea, bestie 🍓 this was lifted straight out of the REAPR-PERFECTMAP(1) manual page, so go forth and map perfectly, you absolute main character 💜✨ 🦋