REAPR-FACHECK(1)

πŸ“¦
version 1.0.18 Β· 5 versions
, in ubuntu resolute, ubuntu stonking

πŸ’– NAME πŸ’–

okay so bestie, this is reapr-facheck β€” it checks IDs in a fasta file. that's the whole vibe. it's the little ID bouncer for your fasta, fr fr. πŸ‘‘βœ¨

✨ SYNOPSIS ✨

reapr facheck <in.fa> [out_prefix]

like... that's it. you got this. πŸ’…

πŸŽ€ DESCRIPTION πŸŽ€

so what it does is it checks that the names in the fasta file are, like, okay. because bestie, things like trailing whitespace or characters like (|':-) could break the pipeline. 😭 and we are NOT letting that happen. no cap.

if out_prefix is not given, it will die when a bad ID is found. dramatic? maybe. iconic? absolutely. πŸ’€ and if it prints no output, that means everything is OK. silence is the slay. πŸ¦‹

if out_prefix is given, it writes a new fasta file called out_prefix.fa with new names, plus out_prefix.info, which has the mapping from old name to new name. so you get the glow-up version AND the receipts. πŸ“βœ¨

careful bestie: that die is real. if the ID is bad and you didn't hand over an out_prefix, it's over. no output = good, output = uh oh. 🚨

🌸 SEE ALSO 🌸

  • reapr(1) β€” the main character, go say hi. 🫢

and that's the whole page, bestie. footer says REAPR-FACHECK(1), no extra date or version drama attached β€” just the name, periodt. πŸ’–πŸŽ€βœ¨

πŸ“¦ where this page comes from