section 1 · User commands 💻

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C (continued)

convert_bruker(1)diffusion-weighted MRI white matter tractography✨
convert_coords(1)converts coordinates of features in a GFF file according to a multiple alignment✨
convert_hd(1)✨
convert_image(1)convert images to CBF format using a template✨
convert_octree(1)convert between OctoMap octree file formats✨
convert_seq(1)conversion of sequence and alignment formats✨
convert_to_should_syntax(1)converts a regular Test::Unit Ruby source file into one that uses shoulda syntax.✨
convert_vcf_to_features(1)visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences✨
convertall(1)A very flexible unit converter✨
convertar(1)Converts trust anchor repositories from one format to another✨
convertar(1p)Converts trust anchor repositories from one format to another✨
convertConfig(1p)A tool to migrate Lemonldap::NG configuration database to a new backend.✨
ConvertDb.py(1)Repertoire clonal assignment toolkit (Python 3)✨
convertECL(1)Converter for Eclipse files (binary <-> formatted format)✨
convertfilestopdf(1)image processing library✨
convertfilestops(1)image processing library✨
convertformat(1)image processing library✨
convertgls2bib(1)✨
convertgls2bib(1texmf-dist)✨
ConvertHeaders.py(1)Converts sequence headers to the pRESTO format✨
ConvertibleBonds(1)Example of using QuantLib to value convertible bonds✨
convertior(1)Utility for creating a new IOR from existing. changing the hostname of an existing stringified IOR✨
convertkey(1)convert OTR key file from old to new format✨
convertPolishes(1)utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length…✨
convertSamples(1)convert or normalize MCMC expression samples✨
convertsegfilestopdf(1)image processing library✨
convertsegfilestops(1)image processing library✨
convertSessions(1p)A tool to convert Lemonldap::NG sessions between storage backends.✨
convertToAtac(1)utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length…✨
convertToExtent(1)utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length…✨
convertToHashSessionStorage(1p)A tool to migrate sessions to hashed storage.✨
converttopdf(1)image processing library✨
converttops(1)image processing library✨
convickt(1)convert INTERCAL files between formats✨
convmv(1)converts filenames from one encoding to another✨
convmvfs(1)utility that mirrors a whole filesystem tree from one charset to another.✨
conway(1)Conway Notation transformations✨
cookiecutter(1)create projects from project templates✨
cool-retro-term(1)terminal emulator mimicking the old cathode display✨
coolconfig(1)Configuration tool for Collabora Online.✨
coolconvert(1)Collabora Online document converter tool✨
cooler(1)sparse, compressed, binary persistent storage✨
coolforkit-caps(1)Utility that spawns LOK instances for Collabora Online✨
coolforkit-ns(1)Utility that spawns LOK instances for Collabora Online✨
coolmail(1)3D animated mail notificaion utility✨
coolmount(1)A very tiny helper to allow overlay mounting for Collabora Online✨
coolstress(1)stress testing tool for Collabora Online.✨
coolwsd(1)Collabora Online Websocket Daemon✨
coolwsd-systemplate-setup(1)Utility that sets up system template for Collabora Online✨
coop-computing-tools(1)share resources in a heterogeneous, and unreliable computing environment✨
coordinateTranslate(1)part of mauveAligner package✨
coot(1)model building program for macromolecular crystallography✨
coot-available-comp-id(1)✨
coot-bfactan(1)✨
coot-compare-dictionaries(1)Compare mmCIF dictionaries✨
coot-density-score-by-residue(1)macromolecular modeling✨
coot-fix-nomenclature-errors(1)✨
coot-identify-protein(1)macromolecular modeling✨
coot-make-shelx-restraints(1)✨
coot-mini-rsr(1)Real space Refinement using X-ray data✨
copac2xml(1)bibliography conversion utilities✨
copr(1)command line interface for the Copr service✨
copr-backend-resultdir-cleaner(1)✨
copr-cli(1)command line interface for the Copr service✨
copr-rpmbuild(1)run COPR builds✨
copy(1)(XENIX) copy groups of files✨
copy-bzrmk(1)Copies bzr.mk (A generator for .bzrignore) to current dir✨
copy-cvsmk(1)Copies cvs.mk (A generator for .cvsignore) to current dir✨
copy-gitmk(1)Copies git.mk (A generator for .gitignore) to current dir✨
copy-hgmk(1)Copies hg.mk (A generator for .hgignore) to current dir✨
copy-svnmk(1)Copies svn.mk (A generator for .svnignore) to current dir✨
copyauth(1)Copies user's AFS credentials to a new cell✨
copydatabase(1)Perform a document-by-document copy of one or more Xapian databases✨
copydbf(1)a collection of tools for xbase database files✨
copydeps(1)copy a program's dependencies (.so / .dll files)✨
copyfilerange(1)copy range(s) from source to destination file✨
copyg(1)manual page for copyg 2.9.3✨
copylink(1p)replace a link with a copy of the linked file✨
copyq(1)Clipboard Manager with Advanced Features✨
copyright-update(1)Update Copyright information in files✨
coq-check-packages(1)check all Coq packages for basic sanity✨
coq-planif-transition(1)planification of a transition✨
coq-platform-comparison(1)compare with the Coq Platform✨
coq-tex(1)process Coq phrases embedded in LaTeX files✨
coq-wanna-build(1)compute dak script for a transition✨
coq.hb(1)Command line utility to apply patches generated by HB.✨
coq_makefile(1)generate makefiles for Coq proof development✨
coqc(1)Coq compiler✨
coqc.byte(1)Coq compiler✨
coqchk(1)verify compiled Coq libraries✨
coqchk.opt(1)verify compiled Coq libraries✨
coqdep(1)compute inter-module dependencies for Coq programs✨
coqdoc(1)documentation tool for the Coq proof assistant✨
coqide(1)graphical interface for the Coq proof assistant✨
coqide.byte(1)graphical interface for the Coq proof assistant✨
coqide.opt(1)graphical interface for the Coq proof assistant✨
coqnative(1)native Coq compiler✨
coqos_add(1)Add a managed data stream✨
coqos_info(1)CoQoS Stream Utility✨
coqos_man(1)Set and monitor bandwidth✨
coqos_mod(1)Suspend or resume a managed data stream✨
coqos_rel(1)Release Bandwidth Management✨
coqtags(1)tags generator for Coq files for Emacs✨
coqtop(1)toplevel Coq system✨
coqtop.byte(1)bytecode toplevel Coq system✨
coqtop.opt(1)The native-code Coq toplevel✨
coqwc(1)print the number of specification, proof and comment lines in Coq files✨
corbatest(1e)Test of EMBL corba retrieval✨
core(1)print information about dead processes✨
coredns(1)✨
coredumpctl(1)Retrieve and process saved core dumps and metadata✨
coregpm.doris(1)perform step COREGPM iteratively from prompt.✨
coreinject(1)inject binary dumps from minicoredumper(8) into a core file✨
corelist(1)a commandline frontend to Module::CoreList✨
corelist(1p)a commandline frontend to Module::CoreList✨
corelist(1perl)a commandline frontend to Module::CoreList✨
corepack(1)Access npm, Yarn and pnpm without having to install them✨
coresched(1)manage core scheduling cookies for tasks✨
coreutils(1)single binary for coreutils programs✨
corkscrew(1)Tunnel TCP connections through HTTP proxies✨
cormapy(1)manual page for cormapy 2026.2✨
corona(1)Corona launcher✨
corona(1p)Corona launcher✨
coronaspades(1)SPAdes genome assembler (coronaSPAdes mode)✨
coronaspades.py(1)SPAdes genome assembler (coronaSPAdes mode)✨
correct_abundances(1)run the genome abundance similarity correction step✨
cortextool(1)✨
cosets(1)generate and print out cosets of a subgroup in a group. Both the group and the subgroup can be given either as H-M symbols of crystallographic groups or as lists of (generating) symmetry operators.✨
coshp(1)sort a shapefile based on the spatial index file✨
cosign(1)Container Signing/Verification/Storage tool✨
cotp(1)Trustworthy, encrypted, command-line TOTP/HOTP authenticator app with import functionality.✨
coturn(1)✨
cougar(1)Hierarchical netlist extractor✨
cougar(1alc)Hierarchical netlist extractor✨
count(1)count the number of elements of a list✨
count.pl(1)Count the frequency of Ngrams in text✨
count2huge.pl(1)Convert the output of count.pl to huge-count.pl.✨
count_extensions(1)count source lines of code (SLOC)✨
count_unknown_ext(1)count source lines of code (SLOC)✨
countcode(1)counts per known source file type the number of source lines✨
counterproc(1p)process a COUNTER report✨
countg(1)manual page for countg 2.9.3✨
countneg(1)manual page for countneg 2.9.3✨
countperl(1)count lines, packages, subs, and complexity of Perl files.✨
countperl(1p)count lines, packages, subs, and complexity of Perl files.✨
countsga(1)read a ChIP-seq data file and computes the total number of tag counts✨
counttodo(1)Return a count of the active tasks in a todo.txt file✨
courier-config(1)displays build configuration of the Courier Mail Server✨
courierlogger(1)Courier syslog wrapper✨
couriermlm(1)The Courier mailing list manager✨
couriertcpd(1)the Courier mail server TCP server daemon✨
couriertls(1)the Courier mail server TLS/SSL protocol wrapper✨
covels-SE(1)detection of transfer RNA genes in genomic sequence✨
cover(1)report coverage statistics✨
cover(1p)report coverage statistics✨
coveralls(1)Coveralls API client utility✨
coverdump(1)extracts cover images to files✨
covered(1)Verilog Code Coverage Analyzer✨
coverpg(1)create a fax coverpg on stdout✨
covertag(1)update audio file image metadata✨
coverview(1)display cover images✨
coves-SE(1)detection of transfer RNA genes in genomic sequence✨
covtobed(1)convert the coverage track from a BAM file into a BED file✨
cow(1)wrapper to run single command using fl-cow✨
cow-module-cmd(1)internal commands used by cow modules✨
cow-shell(1)Start a copy-on-write session and invoke a shell.✨
cowbar(1)relay cow window manager status updates✨
cowbell(1)An easy-to-use tag editor for your music files✨
cowbuilder-dist(1)multi-distribution pbuilder/cowbuilder wrapper✨
cowbuttons(1)Button panel for the cow window manager✨
cowclock(1)analogue clock for CoW✨
cowdancer-ilistcreate(1)create .ilist file for use with cowdancer.✨
cowdancer-ilistdump(1)Dump contents of ilist file.✨
cowdiag(1)live diagnostics dashboard for cow and River✨
cowiconman(1)CoW Icon Manager✨
cowident(1)identify a window managed by cow✨
cowpager(1)FvwmPager-style visual pager for the cow window manager✨
cowpatty(1)Brute-force dictionary attack against WPA-PSK✨
cowpoke(1)Build a Debian source package in a remote cowbuilder instance✨
cowrearrange(1)tile or cascade the windows on a given desk✨
cowsay(1)configurable speaking/thinking cow (and a bit more)✨
cowsql(1)distributed sqlite shell✨
cowsql-demo(1)demo Go cowsql application✨
cowthink(1)configurable speaking/thinking cow (and a bit more)✨
coz(1)profiler running experiements on multithreaded code✨
cp(1)copy files and directories✨
cp(1p)copy files✨
cp(1posix)copy files✨
cp(1ppt)copy files and/or directories✨
CP_reporter(1)✨
cpacfinfo(1)tool to provide information about CPACF✨
cpacfstats(1)enable, disable and display CPACF statistical data✨
cpack(1)CPack Command-Line Reference✨
cpaldjvu(1)DjVuDocument encoder for low-color images.✨
cpan(1)easily interact with CPAN from the command line✨
cpan(1perl)easily interact with CPAN from the command line✨
cpan-audit(1)Audit CPAN modules✨
cpan-audit(1p)Audit CPAN modules✨
cpan-listchanges(1p)List changes for CPAN modules✨
cpan-mirrors(1)Find the fatest CPAN mirrors nearby✨