CONVERTHEADERS.PY(1)

Okay bestie, welcome to the CONVERTHEADERS.PY(1) manual 💖 It's from the User Commands section, and it's all about one cute little tool ✨

✨ NAME ✨

ConvertHeaders.py - converts sequence headers to the pRESTO format 🦋

🌸 DESCRIPTION 🌸

So the whole job here is turning your sequence headers into the pRESTO format, no cap 💅 Here's the usage line you'll want to know:

usage: ConvertHeaders.py [--version] [-h]  ...

Basically, it converts sequence headers to the pRESTO format. That's the entire vibe 🫶

🧚 help:

• --version — shows the program's version number, then bounces 👋
• -h, --help — shows the help message and exits 🌷

👑 subcommands:

This part is where you pick your conversion method, and there are a bunch of options 🍓

• generic — converts sequence headers without a known annotation system 🌈
• 454 — converts Roche 454 sequence headers 🧁
• genbank — converts NCBI GenBank and RefSeq sequence headers 📚
• illumina — converts Illumina sequence headers ⭐
• imgt — converts sequence headers output by IMGT/GENE-DB 🧬
• migec — converts headers for consensus sequences generated by the MIGEC tool 💜
• sra — converts NCBI SRA or EMBL-EBI ENA sequence headers 🦄

📁 output files:

Two files come out the other side, so here's the tea 🍵

• convert-pass — reads that passed header conversion ✅
• convert-fail — raw reads that failed header conversion 💀

🏷️ output annotation fields:

the annotation fields that get added are specific to the header format of the input file, so the exact fields depend on what you feed it 🎀

• <format defined> — the annotation fields added, which depend on the header format of the input file 🎯

🎀 AUTHOR 🎀

Andreas Tille wrote this manpage for the Debian distribution, and it can be used for any other usage of the program 🌸

That's the whole manual, bestie 💅 ConvertHeaders.py 0.6.0, dated May 2020, and you're literally ready to slay your header conversions 👑✨