COOT(1)

💖 NAME 💖

okay so bestie, welcome to COOT(1), straight outta the General Commands Manual 👑 and the star of this whole page is:

coot-mini-rsr — macromolecular modeling 🧬✨

🎀 SYNOPSIS 🎀

coot-mini-rsrs [OPTIONS] ...

that's it. that's the vibe check. she takes options, plural, unspecified, go wild 🙈

🌸 DESCRIPTION 🌸

Coot is a molecular graphics application for modeling and validation. that's the whole description, no notes, she's mysterious like that 💅

fr fr, it's giving "built different, says very little." iconic.

✨ SYNOPSIS ✨ (yes bestie, she did it twice, main character energy 💅)

here's the full lineup of ways you can hand her your stuff:

[--coords|--pdb|--xyzin <coordinates-file-name> ] [--map <CCP4-format-map-file-name> ] [--data|--hklin <mtz-file-name> ] [--auto <mtz-file-name> ] [--script <python/scheme script file-name> ] [--ccp4-project <directory-name> ] [--dictionary <mmCIF/pdbx dictionary file-name> ]

and broken down one by one so your brain doesn't short-circuit 🫶:

• --coords / --pdb / --xyzin <coordinates-file-name> — give her your coordinates file, three ways to say the same thing, pick your fave 🌈
• --map <CCP4-format-map-file-name> — drop in a map file in CCP4 format 🗺️
• --data / --hklin <mtz-file-name> — an mtz file, two spellings, both slay
• --auto <mtz-file-name> — another mtz file, this time the auto one ✨
• --script <python/scheme script file-name> — a script file, python or scheme, your call 🐍
• --ccp4-project <directory-name> — point her at a CCP4 project directory 📁
• --dictionary <mmCIF/pdbx dictionary file-name> — a dictionary file in mmCIF or pdbx form 📖

lowkey important: those are the exact placeholders, don't go renaming them, she reads them literally 💀

that's the whole page bestie, no cap, every last crumb of it 🌟 thanks for reading COOT(1), from the General Commands Manual — mwah, go model something gorgeous 💖🎀🦋