📦 presto

14 pages

A

AlignSets.py(1)Multiple aligns input sequences by group✨
AssemblePairs.py(1)Assembles paired-end reads into a single sequence✨

B

BuildConsensus.py(1)Builds a consensus sequence for each set of input sequences✨

C

ClusterSets.py(1)Cluster sequences by group✨
CollapseSeq.py(1)emoves duplicate sequences from FASTA/FASTQ files✨
ConvertHeaders.py(1)Converts sequence headers to the pRESTO format✨

E

EstimateError.py(1)Calculates annotation set error rates✨

F

FilterSeq.py(1)Filters sequences in FASTA/FASTQ files✨

M

MaskPrimers.py(1)Removes primers and annotates sequences with primer and barcode identifiers✨

P

PairSeq.py(1)Sorts and matches sequence records with matching coordinates across files✨
ParseHeaders.py(1)Parses pRESTO annotations in FASTA/FASTQ sequence headers✨
ParseLog.py(1)Parses records in the console log of pRESTO modules✨

S

SplitSeq.py(1)Sorts, samples and splits FASTA/FASTQ sequence files✨

U

UnifyHeaders.py(1)Unifies annotation fields based on grouping scheme✨