ALIGNSETS.PY(1)

✨ ALIGNSETS.PY(1) ✨

bestie, this is the manual for AlignSets.py 💖 It's section 1 (User Commands), so it's all the stuff you type at the terminal 🫶

✨ NAME ✨

AlignSets.py is giving multiple alignment of input sequences, sorted by group 🦋

✨ DESCRIPTION ✨

okay so here's the usage line you need to know 💅

usage: AlignSets.py [--version] [-h]  ...

AlignSets.py is literally the tool for lining up your input sequences, multiple-aligned group by group. Iconic, honestly 👑

🎀 help:

• --version — shows the program's version number and then exits 🌈
• -h, --help — shows the help message and then exits 🙈

🌸 subcommands:

Pick your alignment method here. Main character energy ✨

• muscle — aligns sequence sets using muscle 💪
• offset — aligns sequence sets using a predefined 5' offset 🍓
• table — makes a 5' offset table by doing a primer multiple alignment 🧚

🧚 output files:

Here's where your results land, no cap 💜

• align-pass — the multiple aligned reads 💖
• align-fail — the raw reads that didn't pass multiple alignment 💀
• offsets-forward — a 5' offset table you feed into the offset subcommand 🦋
• offsets-reverse — a 3' offset table you feed into the offset subcommand 🌸

🫶 output annotation fields:

None. Zero annotation fields, so nothing extra gets tagged on the output 🙈

✨ AUTHOR ✨

Andreas Tille wrote this manpage for the Debian distribution 🎀 And it's totally fine to use it for any other purpose with the program too, periodt 💅

AlignSets.py 0.6.0 · May 2020 · stay aligned, bestie 🌈💜✨