PARSEHEADERS.PY(1)

💖 PARSEHEADERS.PY(1) · User Commands 💖

✨ NAME ✨

okay so ParseHeaders.py is the tool that's literally obsessed with pRESTO annotations 💅 It parses those annotations sitting inside FASTA/FASTQ sequence headers 🦋

🎀 DESCRIPTION 🎀

bestie, here's the usage line 🫶

usage: ParseHeaders.py [--version] [-h]  ...

ngl this is the whole vibe: it parses pRESTO annotations in FASTA/FASTQ sequence headers ✨

🌸 help:

• --version — shows the program's version number and then exits 💜
• -h, --help — shows the help message and exits 🍓

🧚 subcommands:

Annotation operation — every subcommand is one of these operations 💖

• add — adds field/value pairs to header annotations 🎀
• collapse — collapses header annotations that have multiple entries 🫧
• copy — copies header annotation fields 🌈
• delete — deletes fields from header annotations 💀
• expand — expands annotation fields that have multiple values ✨
• merge — merges multiple annotation fields into a single field 🦋
• rename — renames header annotation fields 👑
• table — writes sequence headers out to a table 🌸

📁 output files:

• reheader-pass — reads that pass the annotation operation, modified accordingly ✨
• reheader-fail — raw reads that fail the annotation operation 😭
• headers — a tab delimited table of the selected annotations 💅

🎀 output annotation fields:

• <user defined> — the annotation fields you choose with the -f argument 🫶

👑 AUTHOR 👑

Andreas Tille wrote this manpage for the Debian distribution 🦋 and it can be used for any other usage of the program, so go wild 💖

Slay, bestie. That's ParseHeaders.py 0.6.0, May 2020, PARSEHEADERS.PY(1) 🌈💅✨