ASSEMBLEPAIRS.PY(1)

📦 version 0.7.6, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

Okay bestie, welcome to the User Commands manual page for ASSEMBLEPAIRS.PY(1) 🎀✨ yes, this is the one, iykyk 💅

✨ NAME ✨

AssemblePairs.py - Assembles paired-end reads into a single sequence 🦋 it literally takes your paired-end reads and glues them into one sequence, no cap 💖

✨ DESCRIPTION ✨

Okay so here's the usage line, and it's giving main character energy 👑

usage: AssemblePairs.py [--version] [-h]  ...

Same vibe as the NAME, fr fr. It's all about assembling paired-end reads into a single sequence 🧚

🎀 help

  • --version — shows the program's version number and then bounces 👋
  • -h, --help — shows the help message and exits 🫶

🌸 subcommands

This is where the magic happens ✨ There's an Assembly method section, and these are your options:

  • align — assembles pairs by aligning the ends 💅
  • join — assembles pairs by concatenating the ends 🎀
  • reference — assembles pairs by aligning reads against a reference database 🌈
  • sequential — assembles pairs by first attempting de novo assembly, then reference guided assembly. Lowkey the most thorough one 🔥

📁 output files

  • assemble-pass — successfully assembled reads, ayyy 🦋
  • assemble-fail — raw reads that failed paired-end assembly 💀

🌈 output annotation fields

  • <user defined> — annotation fields you set with the --1f or --2f arguments 🍓

✨ AUTHOR ✨

Andreas Tille wrote this manpage for the Debian distribution, and it's giving "use it for any other usage of the program too" energy 🫶

AssemblePairs.py version 0.6.0, May 2020. That's the tea, bestie 💜🌈

📦 where this page comes from