SPLITSEQ.PY(1)

📦 version 0.7.6, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

Bestie, welcome to the SPLITSEQ.PY(1) manual 💖 (User Commands section, obviously 🎀). Let's get into it ✨

✨ NAME ✨

SplitSeq.py, sorts, samples and splits FASTA/FASTQ sequence files 🧬🌸

📖 DESCRIPTION 📖

Okay so this is the whole vibe: sorting, sampling and splitting your FASTA/FASTQ sequence files 🔥 Here's the usage line, copy-paste it and you're good 💅

usage: SplitSeq.py [--version] [-h]  ...

🎀 help:

  • --version, it shows the program's version number and then exits 🦋
  • -h, --help, it shows the help message and then exits 🫶

🧁 subcommands:

Sequence file operation, the main event 💜

  • count, splits sequence files by number of records 🍓
  • group, splits sequence files by annotation 🌈
  • sample, randomly samples from unpaired sequence files ✨
  • samplepair, randomly samples from paired-end sequence files 👑
  • sort, sorts sequence files by annotation 💖
  • select, selects sequences from sequence files by annotation 🧚

🦋 output files:

These are the file names you'll get back, and they're giving very specific 💅

  • part<part>, reads partitioned by count, where part is the partition number 🌸
  • <field>-<value>, reads partitioned by annotation field and value 🎀
  • under-<number>, reads partitioned by numeric threshold, where the annotation value is strictly less than the threshold number 🔥
  • atleast-<number>, reads partitioned by numeric threshold, where the annotation value is greater than or equal to the threshold number 💅
  • sorted, reads sorted by annotation value ✨
  • sorted-part<part>, reads sorted by annotation value and partitioned by count, where part is the partition number 🧁
  • sample<i>-n<count>, randomly sampled reads, where i is a number specifying the sampling instance and count is the number of sampled reads 🦄
  • selected, reads passing selection criteria 💜

🏷️ output annotation fields:

Literally nothing here 💀 The field is None.

🌈 AUTHOR 🌈

This manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program. Iconic behavior from Andreas 🫶

Ttyl bestie, this was SplitSeq.py 0.6.0 from May 2020 🦋💖✨

📦 where this page comes from