📦 libbio-perl-perl

B (continued)

• Bio::Tools::Match(3pm)Parses output from Transfac's match(TM)✨
• Bio::Tools::MZEF(3pm)Results of one MZEF run✨
• Bio::Tools::OddCodes(3pm)Object holding alternative alphabet coding for one protein sequence✨
• Bio::Tools::Phylo::Gerp(3pm)Parses output from GERP✨
• Bio::Tools::Phylo::Molphy(3pm)parser for Molphy output✨
• Bio::Tools::Phylo::Molphy::Result(3pm)container for data parsed from a ProtML run✨
• Bio::Tools::Phylo::Phylip::ProtDist(3pm)parser for ProtDist output✨
• Bio::Tools::pICalculator(3pm)calculate the isoelectric point of a protein✨
• Bio::Tools::Prediction::Exon(3pm)A predicted exon feature✨
• Bio::Tools::Prediction::Gene(3pm)a predicted gene structure feature✨
• Bio::Tools::Primer3(3pm)Create input for and work with the output from the program primer3✨
• Bio::Tools::Primer::Assessor::Base(3pm)base class for common assessor things✨
• Bio::Tools::Primer::AssessorI(3pm)interface for assessing primer pairs✨
• Bio::Tools::Primer::Feature(3pm)position of a single primer✨
• Bio::Tools::Primer::Pair(3pm)two primers on left and right side✨
• Bio::Tools::Prints(3pm)Parser for FingerPRINTScanII program✨
• Bio::Tools::Profile(3pm)parse Profile output✨
• Bio::Tools::Promoterwise(3pm)parser for Promoterwise tab format output✨
• Bio::Tools::PrositeScan(3pm)Parser for ps_scan result✨
• Bio::Tools::Pseudowise(3pm)Results of one Pseudowise run✨
• Bio::Tools::QRNA(3pm)A Parser for qrna output✨
• Bio::Tools::RandomDistFunctions(3pm)A set of routines useful for generating random data in different distributions✨
• Bio::Tools::RepeatMasker(3pm)a parser for RepeatMasker output✨
• Bio::Tools::Run::Analysis(3pm)Module representing any (remote or local) analysis tool✨
• Bio::Tools::Run::AnalysisFactory(3pm)A directory of analysis tools✨
• Bio::Tools::Run::GenericParameters(3pm)An object for the parameters used to run programs✨
• Bio::Tools::Run::ParametersI(3pm)A Base object for the parameters used to run programs✨
• Bio::Tools::Run::Phylo::PhyloBase(3pm)✨
• Bio::Tools::Run::WrapperBase(3pm)A Base object for wrappers around executables✨
• Bio::Tools::Run::WrapperBase::CommandExts(3pm)Extensions to WrapperBase for handling programs with commands *ALPHA*✨
• Bio::Tools::Seg(3pm)parse "seg" output✨
• Bio::Tools::SeqPattern(3pm)represent a sequence pattern or motif✨
• Bio::Tools::SeqPattern::Backtranslate(3pm)reverse translate protein patterns✨
• Bio::Tools::SeqStats(3pm)Object holding statistics for one particular sequence✨
• Bio::Tools::SeqWords(3pm)Object holding n-mer statistics for a sequence✨
• Bio::Tools::Sigcleave(3pm)Bioperl object for sigcleave analysis✨
• Bio::Tools::Signalp(3pm)parser for Signalp output✨
• Bio::Tools::Signalp::ExtendedSignalp(3pm)enhanced parser for Signalp output✨
• Bio::Tools::Sim4::Exon(3pm)A single exon determined by an alignment✨
• Bio::Tools::Sim4::Results(3pm)Results of one Sim4 run✨
• Bio::Tools::Spidey::Exon(3pm)A single exon determined by an alignment✨
• Bio::Tools::Spidey::Results(3pm)Results of a Spidey run✨
• Bio::Tools::TandemRepeatsFinder(3pm)a parser for Tandem Repeats Finder output✨
• Bio::Tools::TargetP(3pm)Results of one TargetP run✨
• Bio::Tools::Tmhmm(3pm)parse TMHMM output (TransMembrane HMM)✨
• Bio::Tools::tRNAscanSE(3pm)A parser for tRNAscan-SE output✨
• Bio::Tree::AnnotatableNode(3pm)A Tree Node with support for annotation✨
• Bio::Tree::Compatible(3pm)Testing compatibility of phylogenetic trees with nested taxa.✨
• Bio::Tree::DistanceFactory(3pm)Construct a tree using distance based methods✨
• Bio::Tree::Node(3pm)A Simple Tree Node✨
• Bio::Tree::NodeI(3pm)Interface describing a Tree Node✨
• Bio::Tree::NodeNHX(3pm)A Simple Tree Node with support for NHX tags✨
• Bio::Tree::RandomFactory(3pm)TreeFactory for generating Random Trees✨
• Bio::Tree::Statistics(3pm)Calculate certain statistics for a Tree✨
• Bio::Tree::Tree(3pm)An implementation of the TreeI interface.✨
• Bio::Tree::TreeFunctionsI(3pm)Decorated Interface implementing basic Tree exploration methods✨
• Bio::Tree::TreeI(3pm)A Tree object suitable for lots of things, designed originally for Phylogenetic Trees.✨
• Bio::TreeIO(3pm)Parser for Tree files✨
• Bio::TreeIO::cluster(3pm)A TreeIO driver module for parsing Algorithm::Cluster::treecluster() output✨
• Bio::TreeIO::lintree(3pm)Parser for lintree output trees✨
• Bio::TreeIO::newick(3pm)parsing and writing of Newick/PHYLIP/New Hampshire format✨
• Bio::TreeIO::NewickParser(3pm)newick string parser✨
• Bio::TreeIO::nexus(3pm)A TreeIO driver module for parsing Nexus tree output from PAUP✨
• Bio::TreeIO::nhx(3pm)TreeIO implementation for parsing Newick/New Hampshire eXtendend (NHX) format.✨
• Bio::TreeIO::pag(3pm)Bio::TreeIO driver for Pagel format✨
• Bio::TreeIO::phyloxml(3pm)TreeIO implementation for parsing PhyloXML format.✨
• Bio::TreeIO::tabtree(3pm)A simple output format which displays a tree as an ASCII drawing✨
• Bio::TreeIO::TreeEventBuilder(3pm)Build Bio::Tree::Tree's and Bio::Tree::Node's from Events✨
• Bio::UpdateableSeqI(3pm)Descendant of Bio::SeqI that allows updates✨
• Bio::WebAgent(3pm)A base class for Web (any protocol) access✨
• BioPerl(3pm)Perl modules for biology✨