Bio::T...Prints(3pm)

📦
version 1.7.8 · 3 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💖 Bio::T...Prints — the Perl doc page, bestie edition 💖

okay so this is the manual page for Bio::Tools::Prints (that's the 3pm situation, a Perl module doc, you already knew that 💅). It's a parser for the FingerPRINTScanII program, and honestly? It's giving "small module, big protein energy". Let's get into it 🧚

✨ NAME ✨

Bio::Tools::Prints — a parser for the FingerPRINTScanII program. That's the whole vibe. It takes output from that program and turns it into nice Perl objects for you 🎀

🌸 SYNOPSIS 🌸

here's the whole thing in action, copy-paste core:

use Bio::Tools::Prints;
my $prints_parser = Bio::Tools::Prints->new(-fh =>$filehandle );
while( my $prints_feat = $prints_parser->next_result ) {
      push @prints_feat, $prints_feat;
}

like. make the parser, feed it a filehandle, loop next_result until it runs out, shove everything into an array. iconic behavior honestly 👑

🦋 DESCRIPTION 🦋

PRINTScan II is a PRINTS fingerprint identification algorithm. no cap, that's what it is.

Copyright (C) 1998,1999 Phil Scordis — gotta credit the legend 🫶

💌 FEEDBACK 💌

📬 Mailing Lists

bestie, user feedback is literally an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated, fr fr 💜

🫂 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. why? because many experienced and responsive experts will be able look at the problem and quickly address it. please include a thorough description of the problem with code and data examples if at all possible — help them help you, okay? 🙈

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

👑 AUTHOR - Balamurugan Kumarasamy 👑

  • bala@tll.org.sg
  • juguang@tll.org.sg

📖 APPENDIX 📖

the rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ (iykyk 🔥).

🌟 new

  • Title : new
  • Usage : my $obj = Bio::Tools::Prints->new(-fh=>$filehandle);
  • Function: Builds a new Bio::Tools::Prints object
  • Returns : Bio::Tools::Prints
  • Args : -filename
    • -fh (filehandle)

🌟 next_result

  • Title : next_result
  • Usage : my $feat = $prints_parser->next_result
  • Function: Get the next result set from parser data
  • Returns : L<Bio::SeqFeature::Generic>
  • Args : none

🌟 create_feature

  • Title : create_feature
  • Usage : my $feat=$prints_parser->create_feature($feature,$seqname)
  • Function: creates a SeqFeature Generic object
  • Returns : L<Bio::SeqFeature::FeaturePair>
  • Args :
  • Title : print_sac
  • Usage : $prints_parser->print_sac($print_sac)
  • Function: get/set for print_sac
  • Returns :
  • Args :

🌟 seqname

  • Title : seqname
  • Usage : $prints_parser->seqname($seqname)
  • Function: get/set for seqname
  • Returns :
  • Args :

and that's the whole page, babe 🎀 this one's running on perl v5.32.1, dated 2021-08-15, and it lives under Bio::T...Prints(3pm) in the User Contributed Perl Documentation corner of the world. mwah 💋✨

📦 where this page comes from