Bio::T...abtree(3pm)

💖 Bio::T...abtree — the tea ☕

okay so bestie, you found it: Bio::TreeIO::tabtree from the User Contributed Perl Documentation section of the perl manpages. It's a little module that draws your trees as ASCII art. Yes, actual art. We love to see it. 🎀

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✨ NAME ✨

Bio::TreeIO::tabtree — a simple output format which displays a tree as an ASCII drawing 🌳✨

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🌸 SYNOPSIS 🌸

use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'tabtree');

while( my $tree = $in->next_tree ) {
    $out->write_tree($tree);
}

like. read a newick file in, spit a tabtree out. that's the whole loop. she's simple, she's effective, she's an icon 💅

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🦋 DESCRIPTION 🦋

This is a made up format — genuinely invented, not a standard, not a spec, just vibes — and its one (1) job is outputting trees as an ASCII drawing. no cap. 🖍️

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🫶 FEEDBACK 🫶

💌 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. fr fr, they actually read it. 💖

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🧚 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

bestie listen — the mailing list is the move, not the maintainer's DMs. the experts there are right there and ready. and pls pls pls drop your code and data examples, a thorough description of the problem is the whole assignment 🙏

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHOR - Jason Stajich 👑

Email jason@bioperl.org

(he ate, honestly. 🏆)

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📖 APPENDIX 📖

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

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⭐ new

Title   : new
Usage   : my $obj = Bio::TreeIO::tabtree->new();
Function: Builds a new Bio::TreeIO::tabtree object
Returns : Bio::TreeIO::tabtree
Args    :

new object, who dis. no args needed, she just spawns. ✨

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🌈 write_tree

Title   : write_tree
Usage   : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args    : Bio::Tree::TreeI object

you hand her a Bio::Tree::TreeI object, she writes the tree out to the data stream. returns none — she gives you nothing back but the art, and honestly? worth it. 💖

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💀 next_tree

Title   : next_tree
Usage   :
Function: Sorry not possible with this format
Returns : none
Args    : none

sorry bestie, not possible with this format. this one is output-only. there is no Usage, there are no Args, there is no reading. none and none. that's the whole story 😭

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this page came to you via perl v5.32.1, dated 2021-08-15, straight outta Bio::T...abtree(3pm). slay, go draw some trees 🌳💅 periodt.