Bio::TreeIO::nhx(3pm)

💖 Bio::TreeIO::nhx 💖

okay so bestie, welcome to Bio::TreeIO::nhx — the User Contributed Perl Documentation glow-up of a classic. This is the TreeIO implementation for parsing Newick/New Hampshire eXtendend (NHX) format. (yes, "eXtendend" — that's the original spelling, we do not fix it, we respect the heritage 💅)

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✨ SYNOPSIS ✨

# do not use this module directly
use Bio::TreeIO;
my $treeio = Bio::TreeIO->new(-format => 'nhx', -file => 'tree.dnd');
my $tree = $treeio->next_tree;

🚨 read the comment, bestie — # do not use this module directly. This is the backstage crew. You talk to Bio::TreeIO, and it handles the rest. Periodt. 👑

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🌸 DESCRIPTION 🌸

This module handles the parsing and the writing of Newick/New Hampshire eXtended (NHX) format. That's literally the whole job and it does it beautifully. ✨

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🦋 FEEDBACK 🦋

💌 Mailing Lists

ngl, user feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. fr fr, it's giving community 🫶

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🫂 Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. The way that many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. 💖

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted viax the web:

https://github.com/bioperl/bioperl-live/issues

(yes, "viax". that's the original. we leave it, it's iconic now 🙈)

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👑 AUTHOR - Aaron Mackey

Email amackey-at-virginia.edu

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🌈 CONTRIBUTORS

Email jason-at-bioperl-dot-org

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🎀 APPENDIX 🎀

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ — you know, the little private ones with the underscore, iykyk. 💅

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that's the whole page, bestie — no cap. Sending you off with the classic footer energy: this is perl v5.32.1, dated 2021-08-15, and it lives at Bio::TreeIO::nhx(3pm). 🦋✨💖