Bio::T...Profile(3pm)

💖 NAME 💖

Bio::Tools::Profile — bestie, this is the parser for Profile output. That's literally it. She parses, she slays. ✨

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🦋 SYNOPSIS 🦋

okay so here's the whole vibe, copy-paste ready:

use Bio::Tools::Profile;
my $profile_parser = Bio::Tools::Profile->new(-fh =>$filehandle );
while( my $profile_feat = $profile_parser->next_result ) {
      push @profile_feat, $profile_feat;
}

like... make a parser, feed it a filehandle, loop over the results, shove them into an array. that's the whole story. 💅

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🌸 DESCRIPTION 🌸

It's the Parser for Profile output. no cap, that's the job description. 🫶

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🎀 FEEDBACK 🎀

💌 Mailing Lists

ngl, user feedback is a whole integral part of the evolution of this and other Bioperl modules — like, the glow-up is a group project, bestie. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated 🥹

 bioperl-l@bioperl.org                  - General discussion
 http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🫂 Support

okay so real talk: please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

...rather than to the module maintainer directly. why? because there are so many experienced and responsive experts on there who will look at your problem and quickly address it. iconique behavior fr fr. please include a thorough description of the problem with code and data examples if at all possible — the more context, the faster the rescue mission. 💪

🐛 Reporting Bugs

Found a bug? Report it to the Bioperl bug tracking system so we can keep track of the bugs and their resolution together, like a lil shared notes app but for chaos. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHOR — Balamurugan Kumarasamy 👑

Email: fugui@worf.fugu-sg.org

(this person right here? main character energy. we love them. 💜)

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✨ APPENDIX ✨

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ — so if you see an underscore, that's a private lil secret, don't touch unless you know what you're doing. 🙈

💫 new

• Title — new
• Usage — my $obj = Bio::Tools::Profile->new();
• Function — Builds a new Bio::Tools::Profile object
• Returns — Bio::Tools::Profile
• Args — -filename, -fh ($filehandle)

so you either hand her a filename or a filehandle. either way, she's built. 🧚

🌈 next_result

• Title — next_result
• Usage — my $feat = $profile_parser->next_result
• Function — Get the next result set from parser data
• Returns — L<Bio::SeqFeature::FeaturePair>
• Args — none

call her in a loop, she hands you the next feature pair each time. the way that she just... keeps giving. 🔥

⭐ create_feature

• Title — create_feature
• Usage — my $feat= $profile_parser->create_feature($feature)
• Function — creates a Bio::SeqFeature::FeaturePair object
• Returns — L<Bio::SeqFeature::FeaturePair>
• Args — (none listed, bestie — she's mysterious like that 💀)

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heads up: this whole page is Bio::T...Profile(3pm) from User Contributed Perl Documentation, and yes the name is literally abbreviated like that. iykyk. 🎀

okay that's the whole page, love u, go parse something cute. 💖✨🦋🌸

— mwah, written for perl v5.32.1, dated 2021-08-15, from the Bio::T...Profile(3pm) page itself. periodt. 💅