📦 chip-seq

B

• bed2bed_display(1)Convert BED file to BED format suitable for displaying ChIP-seq peaks.✨
• bed2sga(1)Convert BED format into SGA format.✨

C

• chipcenter(1)Feature Centering Tool for ChIP-seq data analysis✨
• chipcor(1)Feature Correlation Tool for ChIP-seq data analysis✨
• chipextract(1)Feature Correlation and Extraction Tool for ChIP-seq data analysis✨
• chippart(1)Partitioning Tool for ChIP-seq data analysis✨
• chippeak(1)Locates signal peaks within a set of tags positions produced by a ChIP-Seq experiment✨
• chipscore(1)Feature Extraction Tool for ChIP-seq data analysis✨
• compactsga(1)reads a ChIP-seq data file and merges equal tag positions into a single line✨
• countsga(1)read a ChIP-seq data file and computes the total number of tag counts✨

F

• featreplace(1)read a ChIP-seq data file and changes the name of the feature field✨
• filter_counts(1)read a ChIP-seq data file and filters out all read counts✨
• fps2sga.pl(1)convert fps to sga✨

G

• gff2sga.pl(1)convert gff to sga✨

P

• partit2bed.pl(1)converts the output of the ChIP-Seq partitioning program to BED format✨

S

• sga2bed(1)Convert SGA format into BED format✨
• sga2fps.pl(1)Convert SGA format into FPS format✨
• sga2gff.pl(1)Convert SGA format into GFF format✨
• sga2wig(1)Convert SGA format into Wiggle Track format✨