SGA2FPS.PL(1)

📦 version 1.5.5, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu resolute, ubuntu stonking

✨ NAME ✨

sga2fps.pl — bestie, this lil script converts SGA format into FPS format. That's it, that's the job. 💅

🌸 DESCRIPTION 🌸

Okay so here's the vibe. You run it like this:

sga2fps.pl [options] <SGA file|stdin>

where options are:

  • -h, --help — shows you this stuff (the help text, the lore, all of it) 🫶
  • --db <path> — use <path> to locate the Chrom Id Storable File chro_idx.nstorage 🔍
  • -f <feature> — sets the <feature> field ✨
  • -s <species>, --species <species> — the assembly <species>, like hg18 for example 🧬
  • --set0flag — sets a 0 flag at position 29 of the FP line, which forces unoriented output. Default is blank, no cap. 🚩
Heads up bestie: --set0flag is the one that flips you into forced unoriented output. Default stays blank unless you ask for it. 👑

🎀 AUTHOR 🎀

This manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program. Iconic of him honestly. 🌈

and that's a wrap!! this was sga2fps.pl version 1.5.5, dated March 2020 — the manual page itself is SGA2FPS.PL(1), mwah, bye bestie 💖🦋

📦 where this page comes from