SGA2GFF.PL(1)

📦 version 1.5.5, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu resolute, ubuntu stonking

💖 NAME 💖

sga2gff.pl — bestie, this little icon converts SGA format into GFF format ✨ like it's literally its whole personality

🌸 DESCRIPTION 🌸

okay so here's the vibe. you run it like this:

sga2gff.pl [options] <SGA file>

and the options you can sprinkle in are… these 👇

  • -h, --help — shows you this stuff. the lore. the whole manual. u get it 💅
  • --db <path> — use <path> to locate the Chrom Id Storable File chro_idx.nstorage. like, that's where it lives, that's where you point 🎀
  • -l, --taglen <taglen> — sets the read length to <taglen> 🦋
  • -x — expands SGA lines into multiple GFF lines. one becomes many. it's giving glow-up, it's giving mitosis ✨🔥
  • -e, --ext <ext_flag> — uses the SGA 6th field to set the GFF feature field, and stores the SGA feature into the GFF source field. two fields, one swap, no cap 💫
ngl that's the whole option list. every single one. nothing hiding in the back, bestie 🫶

👑 AUTHOR 👑

this manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program 💜

and that's the whole page, fr fr — sga2gff.pl version 1.5.5, dated March 2020, and the manual name on the tin is SGA2GFF.PL(1). slay, go convert something 🌈⭐

📦 where this page comes from