FILTER_COUNTS(1)

💖 FILTER_COUNTS(1) 💖

User Commands ✨ aka the filter_counts page, bestie, and yes we're doing the whole thing

🌸 NAME 🌸

filter_counts — reads a ChIP-seq data file and filters out all read counts 🧬💅

✨ SYNOPSIS ✨

filter_counts [options] [<] <SGA File>

🦋 DESCRIPTION 🦋

version 1.5.5, and the options are giving:

• -h — shows you this help text 🙈 (the "help me bestie" button)
• -d — prints debug information 🐛✨ (for when you need to see the receipts)
• -f — the feature that defines your user-defined regions of interest, and the default is RMSK 🎀
• -r — Retain Mode: ON 🔥

okay so here's the vibe 💜: the program reads a ChIP-seq data file — or it reads from stdin if you hit it with [<] — in SGA format (that's your <SGA File>, no cap), and then it filters out all the read counts that happen to fall within your user-defined regions of interest. Think Repeat Mask regions, like when feature=RMSK 🌈.

🫶 now listen: if 'Retain Mode' is on, the behaviour flips — it only retains those lines that are within the user-defined regions. And in that case, the annotation of the user-defined regions gets added to the output SGA file. periodt. 💅

👑 AUTHOR 👑

This manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program. 🎀✨

that's the whole page, you ate that 🌸 — filter_counts 1.5.5, March 2020, iykyk 💖🦋⭐