GFF2SGA.PL(1)

📦 version 1.5.5, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu resolute, ubuntu stonking

💖 GFF2SGA.PL — bestie edition 💖

okay so this is the manpage for gff2sga.pl, and yes the manual name is literally GFF2SGA.PL(1) and it lives in the User Commands section, so you already know it's a lil command-line baddie 🎀

✨ NAME ✨

gff2sga.pl — no cap, it converts gff to sga. that's the whole job. iconic behavior honestly 👑

🌸 DESCRIPTION 🌸

here's the vibe, bestie — this is how you call it:

gff2sga.pl [options] <GFF file>

and the options?? girl. let me put you on 🫶

  • -h, --help — shows you this stuff. the classic "help me help you" move 💅
  • --db <path> — use <path> to go find the Chrom Id Storable File, which is literally named chro_idx.nstorage. it's giving "where's my file at" energy 🔍
  • -f, --feature <feature> — sets the Feature name to <feature>, cute and specific ✨
  • -s, --species <species> — the Assembly for <species>, like hg18 for example 🧬
  • -c — generates a Centered SGA file. centered, as it should be. main character energy fr fr 👑
  • -u — generates an Unoriented SGA file. no direction, just vibes 🦋
  • -x — generates an extended SGA file, where the 6th field is equal to the GFF feature field, and the feature field is equal to the GFF source. yes it's a whole swap situation, keep up bestie 😭

🎀 AUTHOR 🎀

this manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program. periodt 💜

and that's the whole thing! no mystery, no gatekeeping. now go convert some gff, you got this 🌈⭐

gff2sga.pl version 1.5.5, dated March 2020 — tysm for reading, love u, bye bestie 💖🫶✨

📦 where this page comes from